Top interactions from W-Z case-only test in confirmation set. Description: SNP1 and SNP2 are the two corresponding SNP candidates of a pair from the case-only population belonging to chromosomes denote by Chr1 and Chr2; gene1 and gene2 are the corresponding genes annotated to SNP1 and SNP2, respectively. W-Z P value is Wellek Ziegler case-only test p-value; BP is base pair. (DOCX 21 kb
Table S2. Densitometry analysis of western blot signal after pulling-down NR2E1 Wt and variants with...
Figure S2. Gene Set Enrichment Analysis (GSEA) analysis between subtypes in breast cancer. (A-F) GSE...
GSEA gene sets Enriched gene sets detected by GSEA in HS578T/NOD1 (A) and HS578T/NOD2 (B) cells. Gen...
Top interactions from W-Z discovery set interaction test compared with simple logistic linear intera...
Top interactions from W-Z interaction test on the replication set. Description: SNP1 and SNP2 are th...
Overlapped interactions from INTERSNP and CASSI W-Z interaction tests on discovery set. Description:...
PASCAL gene set enrichment analysis results at 1% level of significance. (DOCX 20 kb
DEPICT gene set enrichment analysis results at Bonferroni corrected genome wide significance level. ...
MAGENTA gene set enrichment analysis results at 1% level of significance. (DOCX 20 kb
All detected pathways mutually discovered in both MAGENTA and PASCAL at a 5% level of combined signi...
Number of overlaps in number of SNPs prior quality control between different chips used in genotypin...
Summary of Illumina bead chips used for genotyping different batches of cases and controls. (DOCX 19...
Oestrogen Receptor data. The Oestrogen receptor SNPâs and their effect on probe expression (ESR- S...
Table S1. 16 autocrine ligand-receptor pairs with significant Spearmanâs correlation coefficients ...
Figure S1. Calling somatic methylation status. Figure S2. Example LOH events. Figure S3. Genes frequ...
Table S2. Densitometry analysis of western blot signal after pulling-down NR2E1 Wt and variants with...
Figure S2. Gene Set Enrichment Analysis (GSEA) analysis between subtypes in breast cancer. (A-F) GSE...
GSEA gene sets Enriched gene sets detected by GSEA in HS578T/NOD1 (A) and HS578T/NOD2 (B) cells. Gen...
Top interactions from W-Z discovery set interaction test compared with simple logistic linear intera...
Top interactions from W-Z interaction test on the replication set. Description: SNP1 and SNP2 are th...
Overlapped interactions from INTERSNP and CASSI W-Z interaction tests on discovery set. Description:...
PASCAL gene set enrichment analysis results at 1% level of significance. (DOCX 20 kb
DEPICT gene set enrichment analysis results at Bonferroni corrected genome wide significance level. ...
MAGENTA gene set enrichment analysis results at 1% level of significance. (DOCX 20 kb
All detected pathways mutually discovered in both MAGENTA and PASCAL at a 5% level of combined signi...
Number of overlaps in number of SNPs prior quality control between different chips used in genotypin...
Summary of Illumina bead chips used for genotyping different batches of cases and controls. (DOCX 19...
Oestrogen Receptor data. The Oestrogen receptor SNPâs and their effect on probe expression (ESR- S...
Table S1. 16 autocrine ligand-receptor pairs with significant Spearmanâs correlation coefficients ...
Figure S1. Calling somatic methylation status. Figure S2. Example LOH events. Figure S3. Genes frequ...
Table S2. Densitometry analysis of western blot signal after pulling-down NR2E1 Wt and variants with...
Figure S2. Gene Set Enrichment Analysis (GSEA) analysis between subtypes in breast cancer. (A-F) GSE...
GSEA gene sets Enriched gene sets detected by GSEA in HS578T/NOD1 (A) and HS578T/NOD2 (B) cells. Gen...