Additional file 9: of Enrichment of B cell receptor signaling and epidermal growth factor receptor pathways in monoclonal gammopathy of undetermined significance: a genome-wide genetic interaction study

Subhayan Chattopadhyay (5369492)
Hauke Thomsen (2636140)
Miguel da Silva Filho (5369489)
Niels Weinhold (3527495)
Per Hoffmann (429526)
Markus Nรถthen (4279399)
Arendt Marina (5369498)
Karl-Heinz Jรถckel (4279405)
Bรถrge Schmidt (5369504)
Sonali Pechlivanis (282952)
Christian Langer (5369495)
Hartmut Goldschmidt (87325)
Kari Hemminki (76996)
Asta Fรถrsti (5369501)

Open link

Publication date

June 2018

DOI

10.6084/m9.figshare.6488192.v1

Abstract

DEPICT gene set enrichment analysis results at Bonferroni corrected genome wide significance level. (DOCX 18 kb

Extracted data

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Data Protection

Additional file 9: of Enrichment of B cell receptor signaling and epidermal growth factor receptor pathways in monoclonal gammopathy of undetermined significance: a genome-wide genetic interaction study

Subhayan Chattopadhyay (5369492)
Hauke Thomsen (2636140)
Miguel da Silva Filho (5369489)
Niels Weinhold (3527495)
Per Hoffmann (429526)
Markus Nรถthen (4279399)
Arendt Marina (5369498)
Karl-Heinz Jรถckel (4279405)
Bรถrge Schmidt (5369504)
Sonali Pechlivanis (282952)
Christian Langer (5369495)
Hartmut Goldschmidt (87325)
Kari Hemminki (76996)
Asta Fรถrsti (5369501)

Open link

Publication date

June 2018

DOI

10.6084/m9.figshare.6488192.v1

Abstract

DEPICT gene set enrichment analysis results at Bonferroni corrected genome wide significance level. (DOCX 18 kb

Extracted data

Feng Liang (447805)
Hongzhu Qu (36515)
Qiang Lin (208776)
Yadong Yang (396824)
Xiuyan Ruan (3450233)
Bo Zhang (6559)
Yi Liu (36759)
Chengze Yu (3450230)
Hongyan Zhang (618068)
Xiangdong Fang (180671)
Xiaopeng Hao (1644652)

August 2015

A KEGG pathway figure for the enriched pathway B cell receptor signaling pathway in down-regulated g...

Additional file 9: of Increased B3GALNT2 in hepatocellular carcinoma promotes macrophage recruitment via reducing acetoacetate secretion and elevating MIF activity

Tianxiao Yang (563355)
Yilin Wang (490921)
Wenjuan Dai (1964755)
Xixi Zheng (763131)
Jing Wang (1228470)
Shushu Song (5060252)
Lan Fang (5060246)
Jiangfan Zhou (5060249)
Weicheng Wu (396588)
Jianxin Gu (335766)

April 2018

Figure S5. Gene Ontology analysis of genes correlated with B3GALNT2. a Biological process enrichment...

Additional file 6: of Enrichment of B cell receptor signaling and epidermal growth factor receptor pathways in monoclonal gammopathy of undetermined significance: a genome-wide genetic interaction study

Subhayan Chattopadhyay (5369492)
Hauke Thomsen (2636140)
Miguel da Silva Filho (5369489)
Niels Weinhold (3527495)
Per Hoffmann (429526)
Markus Nรถthen (4279399)
Arendt Marina (5369498)
Karl-Heinz Jรถckel (4279405)
Bรถrge Schmidt (5369504)
Sonali Pechlivanis (282952)
Christian Langer (5369495)
Hartmut Goldschmidt (87325)
Kari Hemminki (76996)
Asta Fรถrsti (5369501)

June 2018

PASCAL gene set enrichment analysis results at 1% level of significance. (DOCX 20 kb

Additional file 7: of Enrichment of B cell receptor signaling and epidermal growth factor receptor pathways in monoclonal gammopathy of undetermined significance: a genome-wide genetic interaction study

Subhayan Chattopadhyay (5369492)
Hauke Thomsen (2636140)
Miguel da Silva Filho (5369489)
Niels Weinhold (3527495)
Per Hoffmann (429526)
Markus Nรถthen (4279399)
Arendt Marina (5369498)
Karl-Heinz Jรถckel (4279405)
Bรถrge Schmidt (5369504)
Sonali Pechlivanis (282952)
Christian Langer (5369495)
Hartmut Goldschmidt (87325)
Kari Hemminki (76996)
Asta Fรถrsti (5369501)

June 2018

MAGENTA gene set enrichment analysis results at 1% level of significance. (DOCX 20 kb

Additional file 8: of Enrichment of B cell receptor signaling and epidermal growth factor receptor pathways in monoclonal gammopathy of undetermined significance: a genome-wide genetic interaction study

Subhayan Chattopadhyay (5369492)
Hauke Thomsen (2636140)
Miguel da Silva Filho (5369489)
Niels Weinhold (3527495)
Per Hoffmann (429526)
Markus Nรถthen (4279399)
Arendt Marina (5369498)
Karl-Heinz Jรถckel (4279405)
Bรถrge Schmidt (5369504)
Sonali Pechlivanis (282952)
Christian Langer (5369495)
Hartmut Goldschmidt (87325)
Kari Hemminki (76996)
Asta Fรถrsti (5369501)

June 2018

All detected pathways mutually discovered in both MAGENTA and PASCAL at a 5% level of combined signi...

Additional file 10: of Enrichment of B cell receptor signaling and epidermal growth factor receptor pathways in monoclonal gammopathy of undetermined significance: a genome-wide genetic interaction study

Subhayan Chattopadhyay (5369492)
Hauke Thomsen (2636140)
Miguel da Silva Filho (5369489)
Niels Weinhold (3527495)
Per Hoffmann (429526)
Markus Nรถthen (4279399)
Arendt Marina (5369498)
Karl-Heinz Jรถckel (4279405)
Bรถrge Schmidt (5369504)
Sonali Pechlivanis (282952)
Christian Langer (5369495)
Hartmut Goldschmidt (87325)
Kari Hemminki (76996)
Asta Fรถrsti (5369501)

June 2018

Summary of Illumina bead chips used for genotyping different batches of cases and controls. (DOCX 19...

Additional file 1: of Enrichment of B cell receptor signaling and epidermal growth factor receptor pathways in monoclonal gammopathy of undetermined significance: a genome-wide genetic interaction study

Subhayan Chattopadhyay (5369492)
Hauke Thomsen (2636140)
Miguel da Silva Filho (5369489)
Niels Weinhold (3527495)
Per Hoffmann (429526)
Markus Nรถthen (4279399)
Arendt Marina (5369498)
Karl-Heinz Jรถckel (4279405)
Bรถrge Schmidt (5369504)
Sonali Pechlivanis (282952)
Christian Langer (5369495)
Hartmut Goldschmidt (87325)
Kari Hemminki (76996)
Asta Fรถrsti (5369501)

June 2018

Top interactions from W-Z discovery set interaction test compared with simple logistic linear intera...

Additional file 2: of Enrichment of B cell receptor signaling and epidermal growth factor receptor pathways in monoclonal gammopathy of undetermined significance: a genome-wide genetic interaction study

Subhayan Chattopadhyay (5369492)
Hauke Thomsen (2636140)
Miguel da Silva Filho (5369489)
Niels Weinhold (3527495)
Per Hoffmann (429526)
Markus Nรถthen (4279399)
Arendt Marina (5369498)
Karl-Heinz Jรถckel (4279405)
Bรถrge Schmidt (5369504)
Sonali Pechlivanis (282952)
Christian Langer (5369495)
Hartmut Goldschmidt (87325)
Kari Hemminki (76996)
Asta Fรถrsti (5369501)

June 2018

Top interactions from W-Z case-only test in confirmation set. Description: SNP1 and SNP2 are the two...

Additional file 3: of Enrichment of B cell receptor signaling and epidermal growth factor receptor pathways in monoclonal gammopathy of undetermined significance: a genome-wide genetic interaction study

Subhayan Chattopadhyay (5369492)
Hauke Thomsen (2636140)
Miguel da Silva Filho (5369489)
Niels Weinhold (3527495)
Per Hoffmann (429526)
Markus Nรถthen (4279399)
Arendt Marina (5369498)
Karl-Heinz Jรถckel (4279405)
Bรถrge Schmidt (5369504)
Sonali Pechlivanis (282952)
Christian Langer (5369495)
Hartmut Goldschmidt (87325)
Kari Hemminki (76996)
Asta Fรถrsti (5369501)

June 2018

Top interactions from W-Z interaction test on the replication set. Description: SNP1 and SNP2 are th...

Additional file 11: of Enrichment of B cell receptor signaling and epidermal growth factor receptor pathways in monoclonal gammopathy of undetermined significance: a genome-wide genetic interaction study

Subhayan Chattopadhyay (5369492)
Hauke Thomsen (2636140)
Miguel da Silva Filho (5369489)
Niels Weinhold (3527495)
Per Hoffmann (429526)
Markus Nรถthen (4279399)
Arendt Marina (5369498)
Karl-Heinz Jรถckel (4279405)
Bรถrge Schmidt (5369504)
Sonali Pechlivanis (282952)
Christian Langer (5369495)
Hartmut Goldschmidt (87325)
Kari Hemminki (76996)
Asta Fรถrsti (5369501)

June 2018

Number of overlaps in number of SNPs prior quality control between different chips used in genotypin...

Additional file 4: of Enrichment of B cell receptor signaling and epidermal growth factor receptor pathways in monoclonal gammopathy of undetermined significance: a genome-wide genetic interaction study

Subhayan Chattopadhyay (5369492)
Hauke Thomsen (2636140)
Miguel da Silva Filho (5369489)
Niels Weinhold (3527495)
Per Hoffmann (429526)
Markus Nรถthen (4279399)
Arendt Marina (5369498)
Karl-Heinz Jรถckel (4279405)
Bรถrge Schmidt (5369504)
Sonali Pechlivanis (282952)
Christian Langer (5369495)
Hartmut Goldschmidt (87325)
Kari Hemminki (76996)
Asta Fรถrsti (5369501)

June 2018

Overlapped interactions from INTERSNP and CASSI W-Z interaction tests on discovery set. Description:...

Enrichment of B cell receptor signaling and epidermal growth factor receptor pathways in monoclonal gammopathy of undetermined significance : a genome-wide genetic interaction study

Chattopadhyay, Subhayan
Thomsen, Hauke
da Silva Filho, Miguel Inacio
Weinhold, Niels
Hoffmann, Per
Nöthen, Markus M
Marina, Arendt
Jöckel, Karl-Heinz
Schmidt, Börge
Pechlivanis, Sonali
Langer, Christian
Goldschmidt, Hartmut
Hemminki, Kari
Försti, Asta

June 2018

BACKGROUND: Recent identification of 10 germline variants predisposing to monoclonal gammopathy of u...

Additional file 6: of Inhibition of monocyte-like cell extravasation protects from neurodegeneration in DBA/2J glaucoma

Pete Williams (3964550)
Catherine Braine (3964547)
Krishnakumar Kizhatil (602346)
Nicole Foxworth (3964541)
Nicholas Tolman (6252839)
Jeffrey Harder (6252842)
Rebecca Scott (2928189)
Gregory Sousa (6252845)
Alyssa Panitch (348401)
Gareth Howell (6252848)
Simon John (3566777)

January 2019

Figure S5. KEGG analysis of enriched gene sets in ONH Monocytes Group 1. Scatter plots of genes by f...

Additional file 1: of Transforming growth factor beta1 targets estrogen receptor signaling in bronchial epithelial cells

L. Cody Smith (5704958)
Santiago Moreno (90184)
Lauren Robertson (5704961)
Sarah Robinson (50404)
Kristal Gant (5704964)
Andrew Bryant (5704967)
Tara Sabo-Attwood (1929190)

August 2018

Table S1. Genes differentially expressed (FDR-corrected p-value < 0.05) in TGFB1 group compared to v...

Additional file 7: of Molecular biomarkers screened by next-generation RNA sequencing for non-sentinel lymph node status prediction in breast cancer patients with metastatic sentinel lymph nodes

Feng Liang (447805)
Hongzhu Qu (36515)
Qiang Lin (208776)
Yadong Yang (396824)
Xiuyan Ruan (3450233)
Bo Zhang (6559)
Yi Liu (36759)
Chengze Yu (3450230)
Hongyan Zhang (618068)
Xiangdong Fang (180671)
Xiaopeng Hao (1644652)

August 2015

A KEGG pathway figure for the enriched pathway B cell receptor signaling pathway in down-regulated g...

Additional file 9: of Increased B3GALNT2 in hepatocellular carcinoma promotes macrophage recruitment via reducing acetoacetate secretion and elevating MIF activity

Tianxiao Yang (563355)
Yilin Wang (490921)
Wenjuan Dai (1964755)
Xixi Zheng (763131)
Jing Wang (1228470)
Shushu Song (5060252)
Lan Fang (5060246)
Jiangfan Zhou (5060249)
Weicheng Wu (396588)
Jianxin Gu (335766)

April 2018

Figure S5. Gene Ontology analysis of genes correlated with B3GALNT2. a Biological process enrichment...

Subhayan Chattopadhyay (5369492)
Hauke Thomsen (2636140)
Miguel da Silva Filho (5369489)
Niels Weinhold (3527495)
Per Hoffmann (429526)
Markus Nรถthen (4279399)
Arendt Marina (5369498)
Karl-Heinz Jรถckel (4279405)
Bรถrge Schmidt (5369504)
Sonali Pechlivanis (282952)
Christian Langer (5369495)
Hartmut Goldschmidt (87325)
Kari Hemminki (76996)
Asta Fรถrsti (5369501)

June 2018

PASCAL gene set enrichment analysis results at 1% level of significance. (DOCX 20 kb

Subhayan Chattopadhyay (5369492)
Hauke Thomsen (2636140)
Miguel da Silva Filho (5369489)
Niels Weinhold (3527495)
Per Hoffmann (429526)
Markus Nรถthen (4279399)
Arendt Marina (5369498)
Karl-Heinz Jรถckel (4279405)
Bรถrge Schmidt (5369504)
Sonali Pechlivanis (282952)
Christian Langer (5369495)
Hartmut Goldschmidt (87325)
Kari Hemminki (76996)
Asta Fรถrsti (5369501)

June 2018

MAGENTA gene set enrichment analysis results at 1% level of significance. (DOCX 20 kb

Subhayan Chattopadhyay (5369492)
Hauke Thomsen (2636140)
Miguel da Silva Filho (5369489)
Niels Weinhold (3527495)
Per Hoffmann (429526)
Markus Nรถthen (4279399)
Arendt Marina (5369498)
Karl-Heinz Jรถckel (4279405)
Bรถrge Schmidt (5369504)
Sonali Pechlivanis (282952)
Christian Langer (5369495)
Hartmut Goldschmidt (87325)
Kari Hemminki (76996)
Asta Fรถrsti (5369501)

June 2018

All detected pathways mutually discovered in both MAGENTA and PASCAL at a 5% level of combined signi...

Subhayan Chattopadhyay (5369492)
Hauke Thomsen (2636140)
Miguel da Silva Filho (5369489)
Niels Weinhold (3527495)
Per Hoffmann (429526)
Markus Nรถthen (4279399)
Arendt Marina (5369498)
Karl-Heinz Jรถckel (4279405)
Bรถrge Schmidt (5369504)
Sonali Pechlivanis (282952)
Christian Langer (5369495)
Hartmut Goldschmidt (87325)
Kari Hemminki (76996)
Asta Fรถrsti (5369501)

June 2018

Summary of Illumina bead chips used for genotyping different batches of cases and controls. (DOCX 19...

Subhayan Chattopadhyay (5369492)
Hauke Thomsen (2636140)
Miguel da Silva Filho (5369489)
Niels Weinhold (3527495)
Per Hoffmann (429526)
Markus Nรถthen (4279399)
Arendt Marina (5369498)
Karl-Heinz Jรถckel (4279405)
Bรถrge Schmidt (5369504)
Sonali Pechlivanis (282952)
Christian Langer (5369495)
Hartmut Goldschmidt (87325)
Kari Hemminki (76996)
Asta Fรถrsti (5369501)

June 2018

Top interactions from W-Z discovery set interaction test compared with simple logistic linear intera...

Subhayan Chattopadhyay (5369492)
Hauke Thomsen (2636140)
Miguel da Silva Filho (5369489)
Niels Weinhold (3527495)
Per Hoffmann (429526)
Markus Nรถthen (4279399)
Arendt Marina (5369498)
Karl-Heinz Jรถckel (4279405)
Bรถrge Schmidt (5369504)
Sonali Pechlivanis (282952)
Christian Langer (5369495)
Hartmut Goldschmidt (87325)
Kari Hemminki (76996)
Asta Fรถrsti (5369501)

June 2018

Top interactions from W-Z case-only test in confirmation set. Description: SNP1 and SNP2 are the two...

Subhayan Chattopadhyay (5369492)
Hauke Thomsen (2636140)
Miguel da Silva Filho (5369489)
Niels Weinhold (3527495)
Per Hoffmann (429526)
Markus Nรถthen (4279399)
Arendt Marina (5369498)
Karl-Heinz Jรถckel (4279405)
Bรถrge Schmidt (5369504)
Sonali Pechlivanis (282952)
Christian Langer (5369495)
Hartmut Goldschmidt (87325)
Kari Hemminki (76996)
Asta Fรถrsti (5369501)

June 2018

Top interactions from W-Z interaction test on the replication set. Description: SNP1 and SNP2 are th...

Subhayan Chattopadhyay (5369492)
Hauke Thomsen (2636140)
Miguel da Silva Filho (5369489)
Niels Weinhold (3527495)
Per Hoffmann (429526)
Markus Nรถthen (4279399)
Arendt Marina (5369498)
Karl-Heinz Jรถckel (4279405)
Bรถrge Schmidt (5369504)
Sonali Pechlivanis (282952)
Christian Langer (5369495)
Hartmut Goldschmidt (87325)
Kari Hemminki (76996)
Asta Fรถrsti (5369501)

June 2018

Number of overlaps in number of SNPs prior quality control between different chips used in genotypin...

Subhayan Chattopadhyay (5369492)
Hauke Thomsen (2636140)
Miguel da Silva Filho (5369489)
Niels Weinhold (3527495)
Per Hoffmann (429526)
Markus Nรถthen (4279399)
Arendt Marina (5369498)
Karl-Heinz Jรถckel (4279405)
Bรถrge Schmidt (5369504)
Sonali Pechlivanis (282952)
Christian Langer (5369495)
Hartmut Goldschmidt (87325)
Kari Hemminki (76996)
Asta Fรถrsti (5369501)

June 2018

Overlapped interactions from INTERSNP and CASSI W-Z interaction tests on discovery set. Description:...

Enrichment of B cell receptor signaling and epidermal growth factor receptor pathways in monoclonal gammopathy of undetermined significance : a genome-wide genetic interaction study

Chattopadhyay, Subhayan
Thomsen, Hauke
da Silva Filho, Miguel Inacio
Weinhold, Niels
Hoffmann, Per
Nöthen, Markus M
Marina, Arendt
Jöckel, Karl-Heinz
Schmidt, Börge
Pechlivanis, Sonali
Langer, Christian
Goldschmidt, Hartmut
Hemminki, Kari
Försti, Asta

June 2018

BACKGROUND: Recent identification of 10 germline variants predisposing to monoclonal gammopathy of u...

Additional file 6: of Inhibition of monocyte-like cell extravasation protects from neurodegeneration in DBA/2J glaucoma

Pete Williams (3964550)
Catherine Braine (3964547)
Krishnakumar Kizhatil (602346)
Nicole Foxworth (3964541)
Nicholas Tolman (6252839)
Jeffrey Harder (6252842)
Rebecca Scott (2928189)
Gregory Sousa (6252845)
Alyssa Panitch (348401)
Gareth Howell (6252848)
Simon John (3566777)

January 2019

Figure S5. KEGG analysis of enriched gene sets in ONH Monocytes Group 1. Scatter plots of genes by f...

Additional file 1: of Transforming growth factor beta1 targets estrogen receptor signaling in bronchial epithelial cells

L. Cody Smith (5704958)
Santiago Moreno (90184)
Lauren Robertson (5704961)
Sarah Robinson (50404)
Kristal Gant (5704964)
Andrew Bryant (5704967)
Tara Sabo-Attwood (1929190)

August 2018

Table S1. Genes differentially expressed (FDR-corrected p-value < 0.05) in TGFB1 group compared to v...

Additional file 7: of Molecular biomarkers screened by next-generation RNA sequencing for non-sentinel lymph node status prediction in breast cancer patients with metastatic sentinel lymph nodes

Feng Liang (447805)
Hongzhu Qu (36515)
Qiang Lin (208776)
Yadong Yang (396824)
Xiuyan Ruan (3450233)
Bo Zhang (6559)
Yi Liu (36759)
Chengze Yu (3450230)
Hongyan Zhang (618068)
Xiangdong Fang (180671)
Xiaopeng Hao (1644652)

August 2015

A KEGG pathway figure for the enriched pathway B cell receptor signaling pathway in down-regulated g...

Additional file 9: of Increased B3GALNT2 in hepatocellular carcinoma promotes macrophage recruitment via reducing acetoacetate secretion and elevating MIF activity

Tianxiao Yang (563355)
Yilin Wang (490921)
Wenjuan Dai (1964755)
Xixi Zheng (763131)
Jing Wang (1228470)
Shushu Song (5060252)
Lan Fang (5060246)
Jiangfan Zhou (5060249)
Weicheng Wu (396588)
Jianxin Gu (335766)

April 2018

Figure S5. Gene Ontology analysis of genes correlated with B3GALNT2. a Biological process enrichment...

Additional file 9: of Enrichment of B cell receptor signaling and epidermal growth factor receptor pathways in monoclonal gammopathy of undetermined significance: a genome-wide genetic interaction study

Abstract

Extracted data

Additional file 9: of Enrichment of B cell receptor signaling and epidermal growth factor receptor pathways in monoclonal gammopathy of undetermined significance: a genome-wide genetic interaction study

Abstract

Extracted data

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