Top interactions from W-Z interaction test on the replication set. Description: SNP1 and SNP2 are the two SNP candidates of a pair from the replication set population belonging to chromosomes denote by Chr1 and Chr2; gene1 and gene2 are the corresponding genes annotated to SNP1 and SNP2, respectively. W-Z P value is Wellek Ziegler case-control test p-value; BP is base pair. (DOCX 22 kb
Figure S1. Calling somatic methylation status. Figure S2. Example LOH events. Figure S3. Genes frequ...
Table S3. Correlation between clinical risk factors of hereditary breast cancer and having pathogeni...
Ten single nucleotide polymorphisms (SNPs) showing lowest P values for interaction with current use ...
Top interactions from W-Z case-only test in confirmation set. Description: SNP1 and SNP2 are the two...
Top interactions from W-Z discovery set interaction test compared with simple logistic linear intera...
Overlapped interactions from INTERSNP and CASSI W-Z interaction tests on discovery set. Description:...
PASCAL gene set enrichment analysis results at 1% level of significance. (DOCX 20 kb
MAGENTA gene set enrichment analysis results at 1% level of significance. (DOCX 20 kb
DEPICT gene set enrichment analysis results at Bonferroni corrected genome wide significance level. ...
All detected pathways mutually discovered in both MAGENTA and PASCAL at a 5% level of combined signi...
Number of overlaps in number of SNPs prior quality control between different chips used in genotypin...
Summary of Illumina bead chips used for genotyping different batches of cases and controls. (DOCX 19...
Oestrogen Receptor data. The Oestrogen receptor SNPâs and their effect on probe expression (ESR- S...
Contribution of selection criteria to genetic interaction types. (A) Hierarchical clustering of GSTF...
Table S1. 16 autocrine ligand-receptor pairs with significant Spearmanâs correlation coefficients ...
Figure S1. Calling somatic methylation status. Figure S2. Example LOH events. Figure S3. Genes frequ...
Table S3. Correlation between clinical risk factors of hereditary breast cancer and having pathogeni...
Ten single nucleotide polymorphisms (SNPs) showing lowest P values for interaction with current use ...
Top interactions from W-Z case-only test in confirmation set. Description: SNP1 and SNP2 are the two...
Top interactions from W-Z discovery set interaction test compared with simple logistic linear intera...
Overlapped interactions from INTERSNP and CASSI W-Z interaction tests on discovery set. Description:...
PASCAL gene set enrichment analysis results at 1% level of significance. (DOCX 20 kb
MAGENTA gene set enrichment analysis results at 1% level of significance. (DOCX 20 kb
DEPICT gene set enrichment analysis results at Bonferroni corrected genome wide significance level. ...
All detected pathways mutually discovered in both MAGENTA and PASCAL at a 5% level of combined signi...
Number of overlaps in number of SNPs prior quality control between different chips used in genotypin...
Summary of Illumina bead chips used for genotyping different batches of cases and controls. (DOCX 19...
Oestrogen Receptor data. The Oestrogen receptor SNPâs and their effect on probe expression (ESR- S...
Contribution of selection criteria to genetic interaction types. (A) Hierarchical clustering of GSTF...
Table S1. 16 autocrine ligand-receptor pairs with significant Spearmanâs correlation coefficients ...
Figure S1. Calling somatic methylation status. Figure S2. Example LOH events. Figure S3. Genes frequ...
Table S3. Correlation between clinical risk factors of hereditary breast cancer and having pathogeni...
Ten single nucleotide polymorphisms (SNPs) showing lowest P values for interaction with current use ...