Overlapped interactions from INTERSNP and CASSI W-Z interaction tests on discovery set. Description: SNP1 and SNP2 are the two SNP candidates of a pair from the discovery set population belonging to chromosomes denote by Chr1 and Chr2; gene1 and gene2 are the corresponding genes annotated to SNP1(s) and SNP2(s), respectively. W-Z P value is Wellek Ziegler case-control test p-value from CASSI and INTERSNP P value is full log-linear test p-value from INTERSNP; BP is base pair. IN: INTERSNP; CAS: CASSI. (DOCX 22 kb
Oestrogen Receptor data. The Oestrogen receptor SNPâs and their effect on probe expression (ESR- S...
Supplemental Methods. Table S1. list of selected candidate genes, GO terms annotations, number of ra...
Figure S1. Calling somatic methylation status. Figure S2. Example LOH events. Figure S3. Genes frequ...
Top interactions from W-Z discovery set interaction test compared with simple logistic linear intera...
Top interactions from W-Z interaction test on the replication set. Description: SNP1 and SNP2 are th...
Top interactions from W-Z case-only test in confirmation set. Description: SNP1 and SNP2 are the two...
DEPICT gene set enrichment analysis results at Bonferroni corrected genome wide significance level. ...
PASCAL gene set enrichment analysis results at 1% level of significance. (DOCX 20 kb
MAGENTA gene set enrichment analysis results at 1% level of significance. (DOCX 20 kb
All detected pathways mutually discovered in both MAGENTA and PASCAL at a 5% level of combined signi...
Number of overlaps in number of SNPs prior quality control between different chips used in genotypin...
Summary of Illumina bead chips used for genotyping different batches of cases and controls. (DOCX 19...
Table S1. 16 autocrine ligand-receptor pairs with significant Spearmanâs correlation coefficients ...
a Beta estimates for interaction between single nucleotide polymorphisms (SNPs) and use of hormone r...
Figure S1. ALK and KMT2D (MLL2) converge on CTNNB1. An evaluation of the potential role of the gene ...
Oestrogen Receptor data. The Oestrogen receptor SNPâs and their effect on probe expression (ESR- S...
Supplemental Methods. Table S1. list of selected candidate genes, GO terms annotations, number of ra...
Figure S1. Calling somatic methylation status. Figure S2. Example LOH events. Figure S3. Genes frequ...
Top interactions from W-Z discovery set interaction test compared with simple logistic linear intera...
Top interactions from W-Z interaction test on the replication set. Description: SNP1 and SNP2 are th...
Top interactions from W-Z case-only test in confirmation set. Description: SNP1 and SNP2 are the two...
DEPICT gene set enrichment analysis results at Bonferroni corrected genome wide significance level. ...
PASCAL gene set enrichment analysis results at 1% level of significance. (DOCX 20 kb
MAGENTA gene set enrichment analysis results at 1% level of significance. (DOCX 20 kb
All detected pathways mutually discovered in both MAGENTA and PASCAL at a 5% level of combined signi...
Number of overlaps in number of SNPs prior quality control between different chips used in genotypin...
Summary of Illumina bead chips used for genotyping different batches of cases and controls. (DOCX 19...
Table S1. 16 autocrine ligand-receptor pairs with significant Spearmanâs correlation coefficients ...
a Beta estimates for interaction between single nucleotide polymorphisms (SNPs) and use of hormone r...
Figure S1. ALK and KMT2D (MLL2) converge on CTNNB1. An evaluation of the potential role of the gene ...
Oestrogen Receptor data. The Oestrogen receptor SNPâs and their effect on probe expression (ESR- S...
Supplemental Methods. Table S1. list of selected candidate genes, GO terms annotations, number of ra...
Figure S1. Calling somatic methylation status. Figure S2. Example LOH events. Figure S3. Genes frequ...