GSEA gene sets Enriched gene sets detected by GSEA in HS578T/NOD1 (A) and HS578T/NOD2 (B) cells. Gene sets are ranked and color coded by their NES (Normalized Enrichment Score) relative to unmodified Hs578T cells (P). For each gene set, name and size of the gene set, ES (Enrichment Score), NES, nominal p-value and FDR (False Discovery Rate) are reported. Color coding performed in MS Office Excel, Red: upregulated. Blue: downregulated. (PDF 215 kb
Figure S2. A, Heat map analysis of the differentially expressed genes in PRAD patients. The TCGA con...
Table S1. Protein expression levels (densitometric data after Westen blot normalization) for each st...
Tabular ranked gene list file (viewable in Excel) pertaining to differential gene expression testing...
Full list of Differentially regulated proteins: Differentially regulated proteins in HS578T/NOD1 (A)...
Figure S2. Gene Set Enrichment Analysis (GSEA) analysis between subtypes in breast cancer. (A-F) GSE...
Figure S1. PTEN protein abundance of breast cancer cell lines. (A) Western blots showing PTEN and ac...
PARADIGM analysis in The Cancer Genome Atlas (TCGA). Table S1. Pathways detected by gene set enrichm...
Table S1. Growth media for breast cancer cell lines used in study. Table S2. PTEN protein abundance ...
Figure S1. Gene expression array profile of TNBC cells identified entinostat and doxorubicin (ED) as...
Increase in protein expression of the transcription factors SNAIL (SNAI2) and SLUG (SNAI1) in progra...
Figure S3. Volcano plot displays the fold change (FC) and statistical significance (FDR) values of g...
B lymphocyte lineage GenomicScape analysis in function of the three H3 subclusters (H3a, H3b, H3c). ...
Identification of ER- tumors that are AR-driven. (A) Top 10 C2 gene sets from MSigDB [22] enriched a...
Expression in untreated breast cancer cell lines in comparison to MCF12A. Probe IDs, gene names, and...
Gene sets derived from T47D cells expressing WT PR and KR PR. These gene sets were used in the analy...
Figure S2. A, Heat map analysis of the differentially expressed genes in PRAD patients. The TCGA con...
Table S1. Protein expression levels (densitometric data after Westen blot normalization) for each st...
Tabular ranked gene list file (viewable in Excel) pertaining to differential gene expression testing...
Full list of Differentially regulated proteins: Differentially regulated proteins in HS578T/NOD1 (A)...
Figure S2. Gene Set Enrichment Analysis (GSEA) analysis between subtypes in breast cancer. (A-F) GSE...
Figure S1. PTEN protein abundance of breast cancer cell lines. (A) Western blots showing PTEN and ac...
PARADIGM analysis in The Cancer Genome Atlas (TCGA). Table S1. Pathways detected by gene set enrichm...
Table S1. Growth media for breast cancer cell lines used in study. Table S2. PTEN protein abundance ...
Figure S1. Gene expression array profile of TNBC cells identified entinostat and doxorubicin (ED) as...
Increase in protein expression of the transcription factors SNAIL (SNAI2) and SLUG (SNAI1) in progra...
Figure S3. Volcano plot displays the fold change (FC) and statistical significance (FDR) values of g...
B lymphocyte lineage GenomicScape analysis in function of the three H3 subclusters (H3a, H3b, H3c). ...
Identification of ER- tumors that are AR-driven. (A) Top 10 C2 gene sets from MSigDB [22] enriched a...
Expression in untreated breast cancer cell lines in comparison to MCF12A. Probe IDs, gene names, and...
Gene sets derived from T47D cells expressing WT PR and KR PR. These gene sets were used in the analy...
Figure S2. A, Heat map analysis of the differentially expressed genes in PRAD patients. The TCGA con...
Table S1. Protein expression levels (densitometric data after Westen blot normalization) for each st...
Tabular ranked gene list file (viewable in Excel) pertaining to differential gene expression testing...