Figure S1. Percentage of 16S rDNA reads in a set of saliva microbiomes and viromes. (PDF 182 kb
Figure S1. Physical approaches to separate human from microbial cells does not reduce percentage hum...
Figure S6. Host depletion via PMA treatment is possible for cryopreserved samples. Raw saliva sample...
Figure S2. Optimization of lyPMA conditions for human DNA depletion. qPCR analysis of the relative a...
Figure S3. Impact of random amplification on beta diversity studies of saliva viromes at different s...
Table S1. Overview of samples and procedures followed for the analysis of mock communities and saliv...
Figure S5. Profile of reads with primer-dimers in contigs with high coverage peaks at regions of low...
Table S6. Proportion of highly biased contigs (fold changes > 10× or < 0.1×). (XLSX 9 kb
Table S8. Normalized abundances (RPKMs) of 4598 cross-contigs from Unamp1-derived viromes, Unamp2, a...
Table S7. Normalized abundances (RPKMs) of 2570 cross-contigs from Unamp1-derived samples. (XLSX 256...
Table S9. Bray-Curtis dissimilarities among saliva viromes. Table S10. Sørensen indexes among saliva...
Table S3. Quality-filtered reads obtained by Miseq-Illumina sequencing and mapped to cross-contigs. ...
Figure S4. Impact of random amplification and sequencing depth on de novo assembly metrics. (PDF 304...
[Background] Viruses are key players regulating microbial ecosystems. Exploration of viral assemblag...
Figure S4. Relative abundance of the top 15 most abundant genera assigned by MetaPhlAn2 across indiv...
Metagenomic NGS results for duplicates of sample # 25. Sample # 25 corresponds to a clinical respira...
Figure S1. Physical approaches to separate human from microbial cells does not reduce percentage hum...
Figure S6. Host depletion via PMA treatment is possible for cryopreserved samples. Raw saliva sample...
Figure S2. Optimization of lyPMA conditions for human DNA depletion. qPCR analysis of the relative a...
Figure S3. Impact of random amplification on beta diversity studies of saliva viromes at different s...
Table S1. Overview of samples and procedures followed for the analysis of mock communities and saliv...
Figure S5. Profile of reads with primer-dimers in contigs with high coverage peaks at regions of low...
Table S6. Proportion of highly biased contigs (fold changes > 10× or < 0.1×). (XLSX 9 kb
Table S8. Normalized abundances (RPKMs) of 4598 cross-contigs from Unamp1-derived viromes, Unamp2, a...
Table S7. Normalized abundances (RPKMs) of 2570 cross-contigs from Unamp1-derived samples. (XLSX 256...
Table S9. Bray-Curtis dissimilarities among saliva viromes. Table S10. Sørensen indexes among saliva...
Table S3. Quality-filtered reads obtained by Miseq-Illumina sequencing and mapped to cross-contigs. ...
Figure S4. Impact of random amplification and sequencing depth on de novo assembly metrics. (PDF 304...
[Background] Viruses are key players regulating microbial ecosystems. Exploration of viral assemblag...
Figure S4. Relative abundance of the top 15 most abundant genera assigned by MetaPhlAn2 across indiv...
Metagenomic NGS results for duplicates of sample # 25. Sample # 25 corresponds to a clinical respira...
Figure S1. Physical approaches to separate human from microbial cells does not reduce percentage hum...
Figure S6. Host depletion via PMA treatment is possible for cryopreserved samples. Raw saliva sample...
Figure S2. Optimization of lyPMA conditions for human DNA depletion. qPCR analysis of the relative a...
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