Figure S3. Impact of random amplification on beta diversity studies of saliva viromes at different sequencing depths. (PDF 359 kb
Figure S1. Physical approaches to separate human from microbial cells does not reduce percentage hum...
List of primer sequences used for amplifying solo LTR and provirus alleles shown in Fig. 3. (PDF 12...
Figure S2. Reproducibility for eWGS for internal control HBB. Data shown is mean ± SD of 4 replicate...
Figure S4. Impact of random amplification and sequencing depth on de novo assembly metrics. (PDF 304...
Figure S1. Percentage of 16S rDNA reads in a set of saliva microbiomes and viromes. (PDF 182 kb
Figure S5. Profile of reads with primer-dimers in contigs with high coverage peaks at regions of low...
Table S1. Overview of samples and procedures followed for the analysis of mock communities and saliv...
Table S3. Quality-filtered reads obtained by Miseq-Illumina sequencing and mapped to cross-contigs. ...
Table S6. Proportion of highly biased contigs (fold changes > 10× or < 0.1×). (XLSX 9 kb
Table S9. Bray-Curtis dissimilarities among saliva viromes. Table S10. Sørensen indexes among saliva...
Table S8. Normalized abundances (RPKMs) of 4598 cross-contigs from Unamp1-derived viromes, Unamp2, a...
Table S7. Normalized abundances (RPKMs) of 2570 cross-contigs from Unamp1-derived samples. (XLSX 256...
[Background] Viruses are key players regulating microbial ecosystems. Exploration of viral assemblag...
Metagenomic NGS results for duplicates of sample # 25. Sample # 25 corresponds to a clinical respira...
Figure S4. Relative abundance of the top 15 most abundant genera assigned by MetaPhlAn2 across indiv...
Figure S1. Physical approaches to separate human from microbial cells does not reduce percentage hum...
List of primer sequences used for amplifying solo LTR and provirus alleles shown in Fig. 3. (PDF 12...
Figure S2. Reproducibility for eWGS for internal control HBB. Data shown is mean ± SD of 4 replicate...
Figure S4. Impact of random amplification and sequencing depth on de novo assembly metrics. (PDF 304...
Figure S1. Percentage of 16S rDNA reads in a set of saliva microbiomes and viromes. (PDF 182 kb
Figure S5. Profile of reads with primer-dimers in contigs with high coverage peaks at regions of low...
Table S1. Overview of samples and procedures followed for the analysis of mock communities and saliv...
Table S3. Quality-filtered reads obtained by Miseq-Illumina sequencing and mapped to cross-contigs. ...
Table S6. Proportion of highly biased contigs (fold changes > 10× or < 0.1×). (XLSX 9 kb
Table S9. Bray-Curtis dissimilarities among saliva viromes. Table S10. Sørensen indexes among saliva...
Table S8. Normalized abundances (RPKMs) of 4598 cross-contigs from Unamp1-derived viromes, Unamp2, a...
Table S7. Normalized abundances (RPKMs) of 2570 cross-contigs from Unamp1-derived samples. (XLSX 256...
[Background] Viruses are key players regulating microbial ecosystems. Exploration of viral assemblag...
Metagenomic NGS results for duplicates of sample # 25. Sample # 25 corresponds to a clinical respira...
Figure S4. Relative abundance of the top 15 most abundant genera assigned by MetaPhlAn2 across indiv...
Figure S1. Physical approaches to separate human from microbial cells does not reduce percentage hum...
List of primer sequences used for amplifying solo LTR and provirus alleles shown in Fig. 3. (PDF 12...
Figure S2. Reproducibility for eWGS for internal control HBB. Data shown is mean ± SD of 4 replicate...
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