Table S6. Proportion of highly biased contigs (fold changes > 10× or < 0.1×). (XLSX 9 kb
The full area under curve estimates at different group sizes for all 14 methods. Higher values repre...
The full area under curve estimates at different effect sizes for all 14 methods. Higher values repr...
List of the MAFs used in the analysis. Table S2. List of 999 batch-biased variants in TCGA data. Tab...
Table S7. Normalized abundances (RPKMs) of 2570 cross-contigs from Unamp1-derived samples. (XLSX 256...
Table S1. Overview of samples and procedures followed for the analysis of mock communities and saliv...
Table S8. Normalized abundances (RPKMs) of 4598 cross-contigs from Unamp1-derived viromes, Unamp2, a...
Table S3. Quality-filtered reads obtained by Miseq-Illumina sequencing and mapped to cross-contigs. ...
Figure S3. Impact of random amplification on beta diversity studies of saliva viromes at different s...
Table S9. Bray-Curtis dissimilarities among saliva viromes. Table S10. Sørensen indexes among saliva...
Figure S1. Percentage of 16S rDNA reads in a set of saliva microbiomes and viromes. (PDF 182 kb
Figure S5. Profile of reads with primer-dimers in contigs with high coverage peaks at regions of low...
Figure S4. Impact of random amplification and sequencing depth on de novo assembly metrics. (PDF 304...
Table S8. Comparison with VirMiner, VirSorter, and VirFinder for contigs >â3âkb based on reads r...
Table S8. Length thresholds used to identify (near) complete virus sequences in metagenomic datasets...
Area under curve estimates on unfiltered data for all 14 methods. Higher values represent higher gen...
The full area under curve estimates at different group sizes for all 14 methods. Higher values repre...
The full area under curve estimates at different effect sizes for all 14 methods. Higher values repr...
List of the MAFs used in the analysis. Table S2. List of 999 batch-biased variants in TCGA data. Tab...
Table S7. Normalized abundances (RPKMs) of 2570 cross-contigs from Unamp1-derived samples. (XLSX 256...
Table S1. Overview of samples and procedures followed for the analysis of mock communities and saliv...
Table S8. Normalized abundances (RPKMs) of 4598 cross-contigs from Unamp1-derived viromes, Unamp2, a...
Table S3. Quality-filtered reads obtained by Miseq-Illumina sequencing and mapped to cross-contigs. ...
Figure S3. Impact of random amplification on beta diversity studies of saliva viromes at different s...
Table S9. Bray-Curtis dissimilarities among saliva viromes. Table S10. Sørensen indexes among saliva...
Figure S1. Percentage of 16S rDNA reads in a set of saliva microbiomes and viromes. (PDF 182 kb
Figure S5. Profile of reads with primer-dimers in contigs with high coverage peaks at regions of low...
Figure S4. Impact of random amplification and sequencing depth on de novo assembly metrics. (PDF 304...
Table S8. Comparison with VirMiner, VirSorter, and VirFinder for contigs >â3âkb based on reads r...
Table S8. Length thresholds used to identify (near) complete virus sequences in metagenomic datasets...
Area under curve estimates on unfiltered data for all 14 methods. Higher values represent higher gen...
The full area under curve estimates at different group sizes for all 14 methods. Higher values repre...
The full area under curve estimates at different effect sizes for all 14 methods. Higher values repr...
List of the MAFs used in the analysis. Table S2. List of 999 batch-biased variants in TCGA data. Tab...
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