Chosen positions. (a) shows the A+/T+ boundary and (b) shows T+/A+ boundary. TSSs of genes cluster near the A+/T+ boundary and have a tendency to occur downstream of this boundary, but avoid the T+/A+ boundary. The converse applies to the TES – see Figure 9.<p><b>Copyright information:</b></p><p>Taken from "Strand bias structure in mouse DNA gives a glimpse of how chromatin structure affects gene expression"</p><p>http://www.biomedcentral.com/1471-2164/9/16</p><p>BMC Genomics 2008;9():16-16.</p><p>Published online 14 Jan 2008</p><p>PMCID:PMC2266913.</p><p></p
Nterquartile range of the ratio is [4.4, 72]. The x-axis is plotted using logs to base 10. The numbe...
N ~ 1152. The error bars show 95% confidence limits. This shows a strong peak near the segment bound...
Author summary During development, enhancer sequences tightly regulate the spatio-temporal expressio...
Igned by their TSS: for this line the x-axis gives the position relative to the TSS. Both lines show...
Re there is transcription in the direction from the A+/T+ boundary to the T+/A+ boundary. The red li...
K bases downstream of this boundary and the lower blue line refers to genes whose TSS falls outside ...
Y, and the red line with respect to the T+/A+ boundary. The data from both sides of the boundary hav...
S show 95% confidence ranges using Hettmansperger-Sheather's method. (a) shows the A+/T+ boundary an...
The real TSSs in the hybrid genome. Although the lines have a common feature of a central peak, the ...
E shows the volume of transcription along one strand from left to right – transcription with the flo...
Nd and T+ on the other. For comparison the median length of genes is 11622. (b) Distance between con...
Ries where there is no recorded transcription from coding genes for 50 kb either side of the boundar...
100 bases. All boundaries in the genome were used in calculating the average. The thickness of the b...
Nome (1017 boundaries) b) The blue line shows the hybrid genome (4124 boundaries), that is the genom...
Nd of the intron) as used in [16]. The plot is restricted to genes of at least 10 k bases. a) ACGT-s...
Nterquartile range of the ratio is [4.4, 72]. The x-axis is plotted using logs to base 10. The numbe...
N ~ 1152. The error bars show 95% confidence limits. This shows a strong peak near the segment bound...
Author summary During development, enhancer sequences tightly regulate the spatio-temporal expressio...
Igned by their TSS: for this line the x-axis gives the position relative to the TSS. Both lines show...
Re there is transcription in the direction from the A+/T+ boundary to the T+/A+ boundary. The red li...
K bases downstream of this boundary and the lower blue line refers to genes whose TSS falls outside ...
Y, and the red line with respect to the T+/A+ boundary. The data from both sides of the boundary hav...
S show 95% confidence ranges using Hettmansperger-Sheather's method. (a) shows the A+/T+ boundary an...
The real TSSs in the hybrid genome. Although the lines have a common feature of a central peak, the ...
E shows the volume of transcription along one strand from left to right – transcription with the flo...
Nd and T+ on the other. For comparison the median length of genes is 11622. (b) Distance between con...
Ries where there is no recorded transcription from coding genes for 50 kb either side of the boundar...
100 bases. All boundaries in the genome were used in calculating the average. The thickness of the b...
Nome (1017 boundaries) b) The blue line shows the hybrid genome (4124 boundaries), that is the genom...
Nd of the intron) as used in [16]. The plot is restricted to genes of at least 10 k bases. a) ACGT-s...
Nterquartile range of the ratio is [4.4, 72]. The x-axis is plotted using logs to base 10. The numbe...
N ~ 1152. The error bars show 95% confidence limits. This shows a strong peak near the segment bound...
Author summary During development, enhancer sequences tightly regulate the spatio-temporal expressio...