The real TSSs in the hybrid genome. Although the lines have a common feature of a central peak, the line for the real genome is higher. The distribution of the positions of the extra TSSs found by the extra segments in the real genome is statistically significant – see Tables 2 and 3.<p><b>Copyright information:</b></p><p>Taken from "Strand bias structure in mouse DNA gives a glimpse of how chromatin structure affects gene expression"</p><p>http://www.biomedcentral.com/1471-2164/9/16</p><p>BMC Genomics 2008;9():16-16.</p><p>Published online 14 Jan 2008</p><p>PMCID:PMC2266913.</p><p></p
Ries where there is no recorded transcription from coding genes for 50 kb either side of the boundar...
N ~ 1152. The error bars show 95% confidence limits. This shows a strong peak near the segment bound...
<p>The line plot shows mean normalised human (black) and mouse (red) higher order chromatin structur...
Igned by their TSS: for this line the x-axis gives the position relative to the TSS. Both lines show...
Chosen positions. (a) shows the A+/T+ boundary and (b) shows T+/A+ boundary. TSSs of genes cluster n...
Nome (1017 boundaries) b) The blue line shows the hybrid genome (4124 boundaries), that is the genom...
Nterquartile range of the ratio is [4.4, 72]. The x-axis is plotted using logs to base 10. The numbe...
K bases downstream of this boundary and the lower blue line refers to genes whose TSS falls outside ...
Re there is transcription in the direction from the A+/T+ boundary to the T+/A+ boundary. The red li...
E shows the volume of transcription along one strand from left to right – transcription with the flo...
100 bases. All boundaries in the genome were used in calculating the average. The thickness of the b...
S show 95% confidence ranges using Hettmansperger-Sheather's method. (a) shows the A+/T+ boundary an...
Nd and T+ on the other. For comparison the median length of genes is 11622. (b) Distance between con...
Nd of the intron) as used in [16]. The plot is restricted to genes of at least 10 k bases. a) ACGT-s...
Y, and the red line with respect to the T+/A+ boundary. The data from both sides of the boundary hav...
Ries where there is no recorded transcription from coding genes for 50 kb either side of the boundar...
N ~ 1152. The error bars show 95% confidence limits. This shows a strong peak near the segment bound...
<p>The line plot shows mean normalised human (black) and mouse (red) higher order chromatin structur...
Igned by their TSS: for this line the x-axis gives the position relative to the TSS. Both lines show...
Chosen positions. (a) shows the A+/T+ boundary and (b) shows T+/A+ boundary. TSSs of genes cluster n...
Nome (1017 boundaries) b) The blue line shows the hybrid genome (4124 boundaries), that is the genom...
Nterquartile range of the ratio is [4.4, 72]. The x-axis is plotted using logs to base 10. The numbe...
K bases downstream of this boundary and the lower blue line refers to genes whose TSS falls outside ...
Re there is transcription in the direction from the A+/T+ boundary to the T+/A+ boundary. The red li...
E shows the volume of transcription along one strand from left to right – transcription with the flo...
100 bases. All boundaries in the genome were used in calculating the average. The thickness of the b...
S show 95% confidence ranges using Hettmansperger-Sheather's method. (a) shows the A+/T+ boundary an...
Nd and T+ on the other. For comparison the median length of genes is 11622. (b) Distance between con...
Nd of the intron) as used in [16]. The plot is restricted to genes of at least 10 k bases. a) ACGT-s...
Y, and the red line with respect to the T+/A+ boundary. The data from both sides of the boundary hav...
Ries where there is no recorded transcription from coding genes for 50 kb either side of the boundar...
N ~ 1152. The error bars show 95% confidence limits. This shows a strong peak near the segment bound...
<p>The line plot shows mean normalised human (black) and mouse (red) higher order chromatin structur...