100 bases. All boundaries in the genome were used in calculating the average. The thickness of the black line shows 95% confidence limits. Comparisons with other features are shown in the following figures. a) A+/T+ boundaries (n = 11750), b) T+/A+ boundaries (n = 11753). The orange line is the mirror image of (a) and is given as a reference line. (b) does not show the shoulder feature of (a).<p><b>Copyright information:</b></p><p>Taken from "Strand bias structure in mouse DNA gives a glimpse of how chromatin structure affects gene expression"</p><p>http://www.biomedcentral.com/1471-2164/9/16</p><p>BMC Genomics 2008;9():16-16.</p><p>Published online 14 Jan 2008</p><p>PMCID:PMC2266913.</p><p></p
Chosen positions. (a) shows the A+/T+ boundary and (b) shows T+/A+ boundary. TSSs of genes cluster n...
The real TSSs in the hybrid genome. Although the lines have a common feature of a central peak, the ...
Me and b) the masked genome. For both subgraphs, each point is based on a sample of 4000 windows lyi...
Ries where there is no recorded transcription from coding genes for 50 kb either side of the boundar...
S show 95% confidence ranges using Hettmansperger-Sheather's method. (a) shows the A+/T+ boundary an...
Igned by their TSS: for this line the x-axis gives the position relative to the TSS. Both lines show...
E shows the volume of transcription along one strand from left to right – transcription with the flo...
Re there is transcription in the direction from the A+/T+ boundary to the T+/A+ boundary. The red li...
Nome (1017 boundaries) b) The blue line shows the hybrid genome (4124 boundaries), that is the genom...
Y, and the red line with respect to the T+/A+ boundary. The data from both sides of the boundary hav...
Nd and T+ on the other. For comparison the median length of genes is 11622. (b) Distance between con...
N ~ 1152. The error bars show 95% confidence limits. This shows a strong peak near the segment bound...
K bases downstream of this boundary and the lower blue line refers to genes whose TSS falls outside ...
Nterquartile range of the ratio is [4.4, 72]. The x-axis is plotted using logs to base 10. The numbe...
Nd of the intron) as used in [16]. The plot is restricted to genes of at least 10 k bases. a) ACGT-s...
Chosen positions. (a) shows the A+/T+ boundary and (b) shows T+/A+ boundary. TSSs of genes cluster n...
The real TSSs in the hybrid genome. Although the lines have a common feature of a central peak, the ...
Me and b) the masked genome. For both subgraphs, each point is based on a sample of 4000 windows lyi...
Ries where there is no recorded transcription from coding genes for 50 kb either side of the boundar...
S show 95% confidence ranges using Hettmansperger-Sheather's method. (a) shows the A+/T+ boundary an...
Igned by their TSS: for this line the x-axis gives the position relative to the TSS. Both lines show...
E shows the volume of transcription along one strand from left to right – transcription with the flo...
Re there is transcription in the direction from the A+/T+ boundary to the T+/A+ boundary. The red li...
Nome (1017 boundaries) b) The blue line shows the hybrid genome (4124 boundaries), that is the genom...
Y, and the red line with respect to the T+/A+ boundary. The data from both sides of the boundary hav...
Nd and T+ on the other. For comparison the median length of genes is 11622. (b) Distance between con...
N ~ 1152. The error bars show 95% confidence limits. This shows a strong peak near the segment bound...
K bases downstream of this boundary and the lower blue line refers to genes whose TSS falls outside ...
Nterquartile range of the ratio is [4.4, 72]. The x-axis is plotted using logs to base 10. The numbe...
Nd of the intron) as used in [16]. The plot is restricted to genes of at least 10 k bases. a) ACGT-s...
Chosen positions. (a) shows the A+/T+ boundary and (b) shows T+/A+ boundary. TSSs of genes cluster n...
The real TSSs in the hybrid genome. Although the lines have a common feature of a central peak, the ...
Me and b) the masked genome. For both subgraphs, each point is based on a sample of 4000 windows lyi...