Nterquartile range of the ratio is [4.4, 72]. The x-axis is plotted using logs to base 10. The number of genes in the plot is 23878. The segment bias operates on a larger scale than the transcription bias.<p><b>Copyright information:</b></p><p>Taken from "Strand bias structure in mouse DNA gives a glimpse of how chromatin structure affects gene expression"</p><p>http://www.biomedcentral.com/1471-2164/9/16</p><p>BMC Genomics 2008;9():16-16.</p><p>Published online 14 Jan 2008</p><p>PMCID:PMC2266913.</p><p></p
Chosen positions. (a) shows the A+/T+ boundary and (b) shows T+/A+ boundary. TSSs of genes cluster n...
Y, and the red line with respect to the T+/A+ boundary. The data from both sides of the boundary hav...
b) the masked genome. For both subgraphs, each point is based on a sample of 4000 windows lying enti...
Nd of the intron) as used in [16]. The plot is restricted to genes of at least 10 k bases. a) ACGT-s...
E shows the volume of transcription along one strand from left to right – transcription with the flo...
Re there is transcription in the direction from the A+/T+ boundary to the T+/A+ boundary. The red li...
Igned by their TSS: for this line the x-axis gives the position relative to the TSS. Both lines show...
Ries where there is no recorded transcription from coding genes for 50 kb either side of the boundar...
100 bases. All boundaries in the genome were used in calculating the average. The thickness of the b...
N ~ 1152. The error bars show 95% confidence limits. This shows a strong peak near the segment bound...
Nd and T+ on the other. For comparison the median length of genes is 11622. (b) Distance between con...
S show 95% confidence ranges using Hettmansperger-Sheather's method. (a) shows the A+/T+ boundary an...
K bases downstream of this boundary and the lower blue line refers to genes whose TSS falls outside ...
The real TSSs in the hybrid genome. Although the lines have a common feature of a central peak, the ...
Nome (1017 boundaries) b) The blue line shows the hybrid genome (4124 boundaries), that is the genom...
Chosen positions. (a) shows the A+/T+ boundary and (b) shows T+/A+ boundary. TSSs of genes cluster n...
Y, and the red line with respect to the T+/A+ boundary. The data from both sides of the boundary hav...
b) the masked genome. For both subgraphs, each point is based on a sample of 4000 windows lying enti...
Nd of the intron) as used in [16]. The plot is restricted to genes of at least 10 k bases. a) ACGT-s...
E shows the volume of transcription along one strand from left to right – transcription with the flo...
Re there is transcription in the direction from the A+/T+ boundary to the T+/A+ boundary. The red li...
Igned by their TSS: for this line the x-axis gives the position relative to the TSS. Both lines show...
Ries where there is no recorded transcription from coding genes for 50 kb either side of the boundar...
100 bases. All boundaries in the genome were used in calculating the average. The thickness of the b...
N ~ 1152. The error bars show 95% confidence limits. This shows a strong peak near the segment bound...
Nd and T+ on the other. For comparison the median length of genes is 11622. (b) Distance between con...
S show 95% confidence ranges using Hettmansperger-Sheather's method. (a) shows the A+/T+ boundary an...
K bases downstream of this boundary and the lower blue line refers to genes whose TSS falls outside ...
The real TSSs in the hybrid genome. Although the lines have a common feature of a central peak, the ...
Nome (1017 boundaries) b) The blue line shows the hybrid genome (4124 boundaries), that is the genom...
Chosen positions. (a) shows the A+/T+ boundary and (b) shows T+/A+ boundary. TSSs of genes cluster n...
Y, and the red line with respect to the T+/A+ boundary. The data from both sides of the boundary hav...
b) the masked genome. For both subgraphs, each point is based on a sample of 4000 windows lying enti...