K bases downstream of this boundary and the lower blue line refers to genes whose TSS falls outside this range. The analysis is based on 2532 genes (red line) and 11291 genes (blue line). This figure explains why genes with TSS near this boundary are often expressed, despite the fact that these genes tend to be long genes (Figure 11a) and long genes tend to be less often expressed (Figure 12a). The plot shows plus and minus one standard error.<p><b>Copyright information:</b></p><p>Taken from "Strand bias structure in mouse DNA gives a glimpse of how chromatin structure affects gene expression"</p><p>http://www.biomedcentral.com/1471-2164/9/16</p><p>BMC Genomics 2008;9():16-16.</p><p>Published online 14 Jan 2008</p><p>PMCID:PMC2266913.</p><p...
The real TSSs in the hybrid genome. Although the lines have a common feature of a central peak, the ...
S show 95% confidence ranges using Hettmansperger-Sheather's method. (a) shows the A+/T+ boundary an...
b) the masked genome. For both subgraphs, each point is based on a sample of 4000 windows lying enti...
Igned by their TSS: for this line the x-axis gives the position relative to the TSS. Both lines show...
Ries where there is no recorded transcription from coding genes for 50 kb either side of the boundar...
Re there is transcription in the direction from the A+/T+ boundary to the T+/A+ boundary. The red li...
Chosen positions. (a) shows the A+/T+ boundary and (b) shows T+/A+ boundary. TSSs of genes cluster n...
100 bases. All boundaries in the genome were used in calculating the average. The thickness of the b...
Nd of the intron) as used in [16]. The plot is restricted to genes of at least 10 k bases. a) ACGT-s...
Nterquartile range of the ratio is [4.4, 72]. The x-axis is plotted using logs to base 10. The numbe...
Y, and the red line with respect to the T+/A+ boundary. The data from both sides of the boundary hav...
Nome (1017 boundaries) b) The blue line shows the hybrid genome (4124 boundaries), that is the genom...
N ~ 1152. The error bars show 95% confidence limits. This shows a strong peak near the segment bound...
Nd and T+ on the other. For comparison the median length of genes is 11622. (b) Distance between con...
E shows the volume of transcription along one strand from left to right – transcription with the flo...
The real TSSs in the hybrid genome. Although the lines have a common feature of a central peak, the ...
S show 95% confidence ranges using Hettmansperger-Sheather's method. (a) shows the A+/T+ boundary an...
b) the masked genome. For both subgraphs, each point is based on a sample of 4000 windows lying enti...
Igned by their TSS: for this line the x-axis gives the position relative to the TSS. Both lines show...
Ries where there is no recorded transcription from coding genes for 50 kb either side of the boundar...
Re there is transcription in the direction from the A+/T+ boundary to the T+/A+ boundary. The red li...
Chosen positions. (a) shows the A+/T+ boundary and (b) shows T+/A+ boundary. TSSs of genes cluster n...
100 bases. All boundaries in the genome were used in calculating the average. The thickness of the b...
Nd of the intron) as used in [16]. The plot is restricted to genes of at least 10 k bases. a) ACGT-s...
Nterquartile range of the ratio is [4.4, 72]. The x-axis is plotted using logs to base 10. The numbe...
Y, and the red line with respect to the T+/A+ boundary. The data from both sides of the boundary hav...
Nome (1017 boundaries) b) The blue line shows the hybrid genome (4124 boundaries), that is the genom...
N ~ 1152. The error bars show 95% confidence limits. This shows a strong peak near the segment bound...
Nd and T+ on the other. For comparison the median length of genes is 11622. (b) Distance between con...
E shows the volume of transcription along one strand from left to right – transcription with the flo...
The real TSSs in the hybrid genome. Although the lines have a common feature of a central peak, the ...
S show 95% confidence ranges using Hettmansperger-Sheather's method. (a) shows the A+/T+ boundary an...
b) the masked genome. For both subgraphs, each point is based on a sample of 4000 windows lying enti...