All atom root-mean-square deviations after performing 10 ns of molecular dynamics simulation of A) EhSAT1-cysteine & H208S-EhSAT1-cysteine, EhSAT1-serine & H208S-EhSAT1-serine B) EhSAT3-cysteine & S208H-EhSAT3-cysteine, EhSAT3-serine & S208H-EhSAT3-serine.

Evolution of root mean square deviation (RMSD) of the atoms in the backbone of the proteins over time from the initial structure for: P. przewalskii (hsHb1, hsHb2, hsHb3) and P. erythrurus (hwHb1, hwHb2, hwHb3).

Songsong Lu (2213296)
Ying Xin (424597)
Xiaolong Tang (442900)
Feng Yue (87255)
Huihui Wang (442901)
Yucheng Bai (2213290)
Yonggang Niu (2213293)
Qiang Chen (114038)

May 2015

Evolution of root mean square deviation (RMSD) of the atoms in the backbone of the proteins over ...

Changes in the molecular dynamics simulations due to mutations in the subunits.

Carlos M. Figueroa (425873)
Misty L. Kuhn (425874)
Christine A. Falaschetti (425875)
Ligin Solamen (425876)
Kenneth W. Olsen (425877)
Miguel A. Ballicora (425878)
Alberto A. Iglesias (425879)

June 2013

The structures are colored according to the difference RMSF values. Colors used are purple, more ...

Trajectory-based structural stability analyses of WT and mutants.

Poornima Gajendrarao (391607)
Navaneethakrishnan Krishnamoorthy (391608)
Heba Sh Kassem (391609)
Sarah Moharem-Elgamal (391610)
Franco Cecchi (391611)
Iacopo Olivotto (391612)
Magdi H. Yacoub (75834)

March 2013

(A) Root mean square deviation (RMSD) and (B) average root mean square fluctuation (RMSF) of resi...

Modeling of the wild type (WT) and the mutant (Dβ484N) EcPA stability at pH 10.0.

Dmitry Suplatov (473064)
Nikolay Panin (588163)
Evgeny Kirilin (473065)
Tatyana Shcherbakova (588164)
Pavel Kudryavtsev (588165)
Vytas Švedas (473067)

June 2014

Root mean square deviation (RMSD) for each enzyme variant has been averaged over three independen...

Molecular dynamics (MD) simulation.

Kaori Asamitsu (433926)
Takatsugu Hirokawa (59421)
Yurina Hibi (703463)
Takashi Okamoto (433928)

March 2015

(a) Time course of root mean square deviations (RMSDs) of wild-type CycT1 (left) and CycT1 mutant...

RMSD and RMSF profile for WT-ANG and mutants.

Aditya K. Padhi (181143)
Hirdesh Kumar (181146)
Suhas V. Vasaikar (181149)
Bhyravabhotla Jayaram (181151)
James Gomes (181153)

February 2012

(A) Control plots representing the stability of the models during the molecular dynamics run. The...

Root-mean-square deviation (RMSD) plot for the SP-G backbone atoms.

Felix Rausch (302371)
Martin Schicht (287742)
Friedrich Paulsen (44377)
Ivan Ngueya (302372)
Lars Bräuer (287741)
Wolfgang Brandt (248665)

February 2013

The RMSD was calculated over the whole simulation process to check the stability of the unmodifie...

Global properties for molecular dynamics simulations.

Weiwei Xue (527290)
Ying Yang (24175)
Xiaoting Wang (206653)
Huanxiang Liu (418534)
Xiaojun Yao (220558)

February 2014

(A) The backbone atom root mean square deviation (RMSD) for apo, inhibitor bound, apo (truncated)...

Molecular dynamics simulations of STAT5 proteins.

Florent Langenfeld (840773)
Yann Guarracino (840774)
Michel Arock (91968)
Alain Trouvé (606791)
Luba Tchertanov (140042)

January 2016

(A) The root mean square deviations (RMSDs) from the initial coordinates computed on the C...

Molecular Dynamic simulation.

Annarita Fiorillo (140695)
Daniele di Marino (5658514)
Lucia Bertuccini (182719)
Allegra Via (3989)
Edoardo Pozio (139157)
Serena Camerini (469772)
Andrea Ilari (140699)
Marco Lalle (469770)

March 2014

A) The evolution of the RMSD (Root Mean Square Deviation) of WT-g14-3-3 (in red) and Pho-g14-3-3 ...

Overall dynamic behaviors in the MD simulations.

Liangzhong Lim (229433)
Jiahai Shi (229430)
Yuguang Mu (29465)
Jianxing Song (143189)

July 2014

Root-mean-square deviations (RMSD) of the Cα atoms (from their positions in the energy minimized ...

RMSFs of the Cα atoms in mutants.

Kana Kobayashi (559383)
Ohgi Takahashi (559384)
Masahiro Hiratsuka (394625)
Noriyuki Yamaotsu (518774)
Shuichi Hirono (518775)
Yurie Watanabe (559385)
Akifumi Oda (559386)

May 2014

(A) CYP2B6.4, (B) CYP2B6.8, (C) CYP2B6.11, (D) CYP2B6.12, (E) CYP2B6. 15, (F) CYP2B6. 18, (G) CYP...

Comparison of Km for both native and mutant proteins of EhSAT1 and EhSAT3 at different cysteine concentrations.

Sudhir Kumar (26282)
Mohit Mazumder (172623)
Sudhaker Dharavath (380735)
S. Gourinath (380736)

February 2013

Comparison of Km for both native and mutant proteins of EhSAT1 and EhSAT3 at different...

Root mean square deviation (RMSD) and fluctuation (RMSF) in two systems of two H1N1 viruses.

Nanyu Han (136922)
Xuewei Liu (136925)
Yuguang Mu (29465)

September 2012

Root mean square deviation (RMSD) of heavy atoms of WT (<a href="http://www.plosone.org/article/i...

Comparison of the average RMSD values in the mutant regions (within 5Å distance from the disulfide bonds) between wild-type BglTM and the mutants.

Chengtuo Niu (1592089)
Linjiang Zhu (1592083)
Xin Xu (11989)
Qi Li (67548)

April 2016

Comparison of the average RMSD values in the mutant regions (within 5Å distance from the disulfid...

Evolution of root mean square deviation (RMSD) of the atoms in the backbone of the proteins over time from the initial structure for: P. przewalskii (hsHb1, hsHb2, hsHb3) and P. erythrurus (hwHb1, hwHb2, hwHb3).

Songsong Lu (2213296)
Ying Xin (424597)
Xiaolong Tang (442900)
Feng Yue (87255)
Huihui Wang (442901)
Yucheng Bai (2213290)
Yonggang Niu (2213293)
Qiang Chen (114038)

May 2015

Evolution of root mean square deviation (RMSD) of the atoms in the backbone of the proteins over ...

Changes in the molecular dynamics simulations due to mutations in the subunits.

Carlos M. Figueroa (425873)
Misty L. Kuhn (425874)
Christine A. Falaschetti (425875)
Ligin Solamen (425876)
Kenneth W. Olsen (425877)
Miguel A. Ballicora (425878)
Alberto A. Iglesias (425879)

June 2013

The structures are colored according to the difference RMSF values. Colors used are purple, more ...

Trajectory-based structural stability analyses of WT and mutants.

Poornima Gajendrarao (391607)
Navaneethakrishnan Krishnamoorthy (391608)
Heba Sh Kassem (391609)
Sarah Moharem-Elgamal (391610)
Franco Cecchi (391611)
Iacopo Olivotto (391612)
Magdi H. Yacoub (75834)

March 2013

(A) Root mean square deviation (RMSD) and (B) average root mean square fluctuation (RMSF) of resi...

Modeling of the wild type (WT) and the mutant (Dβ484N) EcPA stability at pH 10.0.

Dmitry Suplatov (473064)
Nikolay Panin (588163)
Evgeny Kirilin (473065)
Tatyana Shcherbakova (588164)
Pavel Kudryavtsev (588165)
Vytas Švedas (473067)

June 2014

Root mean square deviation (RMSD) for each enzyme variant has been averaged over three independen...

Molecular dynamics (MD) simulation.

Kaori Asamitsu (433926)
Takatsugu Hirokawa (59421)
Yurina Hibi (703463)
Takashi Okamoto (433928)

March 2015

(a) Time course of root mean square deviations (RMSDs) of wild-type CycT1 (left) and CycT1 mutant...

RMSD and RMSF profile for WT-ANG and mutants.

Aditya K. Padhi (181143)
Hirdesh Kumar (181146)
Suhas V. Vasaikar (181149)
Bhyravabhotla Jayaram (181151)
James Gomes (181153)

February 2012

(A) Control plots representing the stability of the models during the molecular dynamics run. The...

Root-mean-square deviation (RMSD) plot for the SP-G backbone atoms.

Felix Rausch (302371)
Martin Schicht (287742)
Friedrich Paulsen (44377)
Ivan Ngueya (302372)
Lars Bräuer (287741)
Wolfgang Brandt (248665)

February 2013

The RMSD was calculated over the whole simulation process to check the stability of the unmodifie...

Global properties for molecular dynamics simulations.

Weiwei Xue (527290)
Ying Yang (24175)
Xiaoting Wang (206653)
Huanxiang Liu (418534)
Xiaojun Yao (220558)

February 2014

(A) The backbone atom root mean square deviation (RMSD) for apo, inhibitor bound, apo (truncated)...

Molecular dynamics simulations of STAT5 proteins.

Florent Langenfeld (840773)
Yann Guarracino (840774)
Michel Arock (91968)
Alain Trouvé (606791)
Luba Tchertanov (140042)

January 2016

(A) The root mean square deviations (RMSDs) from the initial coordinates computed on the C...

Molecular Dynamic simulation.

Annarita Fiorillo (140695)
Daniele di Marino (5658514)
Lucia Bertuccini (182719)
Allegra Via (3989)
Edoardo Pozio (139157)
Serena Camerini (469772)
Andrea Ilari (140699)
Marco Lalle (469770)

March 2014

A) The evolution of the RMSD (Root Mean Square Deviation) of WT-g14-3-3 (in red) and Pho-g14-3-3 ...

Overall dynamic behaviors in the MD simulations.

Liangzhong Lim (229433)
Jiahai Shi (229430)
Yuguang Mu (29465)
Jianxing Song (143189)

July 2014

Root-mean-square deviations (RMSD) of the Cα atoms (from their positions in the energy minimized ...

RMSFs of the Cα atoms in mutants.

Kana Kobayashi (559383)
Ohgi Takahashi (559384)
Masahiro Hiratsuka (394625)
Noriyuki Yamaotsu (518774)
Shuichi Hirono (518775)
Yurie Watanabe (559385)
Akifumi Oda (559386)

May 2014

(A) CYP2B6.4, (B) CYP2B6.8, (C) CYP2B6.11, (D) CYP2B6.12, (E) CYP2B6. 15, (F) CYP2B6. 18, (G) CYP...

Comparison of Km for both native and mutant proteins of EhSAT1 and EhSAT3 at different cysteine concentrations.

Sudhir Kumar (26282)
Mohit Mazumder (172623)
Sudhaker Dharavath (380735)
S. Gourinath (380736)

February 2013

Comparison of Km for both native and mutant proteins of EhSAT1 and EhSAT3 at different...

Root mean square deviation (RMSD) and fluctuation (RMSF) in two systems of two H1N1 viruses.

Nanyu Han (136922)
Xuewei Liu (136925)
Yuguang Mu (29465)

September 2012

Root mean square deviation (RMSD) of heavy atoms of WT (<a href="http://www.plosone.org/article/i...

Comparison of the average RMSD values in the mutant regions (within 5Å distance from the disulfide bonds) between wild-type BglTM and the mutants.

Chengtuo Niu (1592089)
Linjiang Zhu (1592083)
Xin Xu (11989)
Qi Li (67548)

April 2016

Comparison of the average RMSD values in the mutant regions (within 5Å distance from the disulfid...

Evolution of root mean square deviation (RMSD) of the atoms in the backbone of the proteins over time from the initial structure for: P. przewalskii (hsHb1, hsHb2, hsHb3) and P. erythrurus (hwHb1, hwHb2, hwHb3).

Songsong Lu (2213296)
Ying Xin (424597)
Xiaolong Tang (442900)
Feng Yue (87255)
Huihui Wang (442901)
Yucheng Bai (2213290)
Yonggang Niu (2213293)
Qiang Chen (114038)

May 2015

Evolution of root mean square deviation (RMSD) of the atoms in the backbone of the proteins over ...

Changes in the molecular dynamics simulations due to mutations in the subunits.

Carlos M. Figueroa (425873)
Misty L. Kuhn (425874)
Christine A. Falaschetti (425875)
Ligin Solamen (425876)
Kenneth W. Olsen (425877)
Miguel A. Ballicora (425878)
Alberto A. Iglesias (425879)

June 2013

The structures are colored according to the difference RMSF values. Colors used are purple, more ...

Trajectory-based structural stability analyses of WT and mutants.

Poornima Gajendrarao (391607)
Navaneethakrishnan Krishnamoorthy (391608)
Heba Sh Kassem (391609)
Sarah Moharem-Elgamal (391610)
Franco Cecchi (391611)
Iacopo Olivotto (391612)
Magdi H. Yacoub (75834)

March 2013

(A) Root mean square deviation (RMSD) and (B) average root mean square fluctuation (RMSF) of resi...

All atom root-mean-square deviations after performing 10 ns of molecular dynamics simulation of A) EhSAT1-cysteine & H208S-EhSAT1-cysteine, EhSAT1-serine & H208S-EhSAT1-serine B) EhSAT3-cysteine & S208H-EhSAT3-cysteine, EhSAT3-serine & S208H-EhSAT3-serine.

Abstract

Extracted data

Topics

All atom root-mean-square deviations after performing 10 ns of molecular dynamics simulation of A) EhSAT1-cysteine & H208S-EhSAT1-cysteine, EhSAT1-serine & H208S-EhSAT1-serine B) EhSAT3-cysteine & S208H-EhSAT3-cysteine, EhSAT3-serine & S208H-EhSAT3-serine.

Abstract

Extracted data

Topics

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