Root mean square deviation (RMSD) and fluctuation (RMSF) in two systems of two H1N1 viruses.

<p>Root mean square deviation (RMSD) of heavy atoms of WT (<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0044057#pone-0044057-g002" target="_blank">Figure 2A</a>) and Q136K (<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0044057#pone-0044057-g002" target="_blank">Figure 2B</a>) in 1918 N1. <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0044057#pone-0044057-g002" target="_blank">Figure 2D and 2E</a> show heavy atoms RMSD of WT and Q136K of 2009 N1. Black, red, green color lines represent three times simulation of apo form structures. <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0044057#pone-0044057-g002" target="_blank">Figure 2C and 2F</a> show Root mean square fluctuation (RMSF) of each residue during apo form simulations for 1918 N1 and 2009 N1. Black and red lines represent WT and Q136K respectively.