<p>Panel A indicates those genes up-regulated (upper) and down-regulated (lower) by anoxia treatment. Panel B presents the same profiles following removal of the outlier genes as described in the Methods section. Panel C shows that the anoxic response (A7/A1 contrast) was inversely correlated with the subsequent reoxygenation response (R7/A7 contrast). Panel D illustrates the diverse profiles for 75 outlier genes grouped into 16 clusters.</p
<p>Yellow triangles represent up-regulated genes, blue rhombuses indicate down-regulated genes, and ...
<p>The data was plotted as logarithmic values of RQ versus the base-line logarithmic level of expres...
<p>For calculation of the correlation coefficients, we used the fold changes in expression compared ...
<p>Downregulated genes had more exons than upregulated ones (t-test, P-value = 0.007, t = 2.848, df ...
<p>Individual gene expression profiles are plotted horizontally against vertical columns of each die...
<div><p>(A) An unsupervised hierarchical clustering representation of the weighted difference betwee...
<p>The colored cells show the mean expression level of the biological replicates at each time point ...
Genes (shown in Fig 4) whose expression levels changed significantly in each treatment sample are in...
<p>ANOVA interaction identified 403 genes both differentially methylated and differentially expresse...
<p>(A) Normalised log2 transformed gene expression data was compared in a box plot to ensure that no...
<p> <b>A.</b> Gene clustering of 295 NKI samples using genes selected by one-wa...
<p>Column indicates H9 and P50 strains, row represent a gene. Expression levels are shown in differe...
<p>Hierarchical clustering of the expression fold change values, as compared between MNU and DMSO tr...
<p>The average differential expression profiles (treated minus control) of the genes in the differen...
<p>Each of the 16 columns represents a different contrast between treatment groups, as indicated in ...
<p>Yellow triangles represent up-regulated genes, blue rhombuses indicate down-regulated genes, and ...
<p>The data was plotted as logarithmic values of RQ versus the base-line logarithmic level of expres...
<p>For calculation of the correlation coefficients, we used the fold changes in expression compared ...
<p>Downregulated genes had more exons than upregulated ones (t-test, P-value = 0.007, t = 2.848, df ...
<p>Individual gene expression profiles are plotted horizontally against vertical columns of each die...
<div><p>(A) An unsupervised hierarchical clustering representation of the weighted difference betwee...
<p>The colored cells show the mean expression level of the biological replicates at each time point ...
Genes (shown in Fig 4) whose expression levels changed significantly in each treatment sample are in...
<p>ANOVA interaction identified 403 genes both differentially methylated and differentially expresse...
<p>(A) Normalised log2 transformed gene expression data was compared in a box plot to ensure that no...
<p> <b>A.</b> Gene clustering of 295 NKI samples using genes selected by one-wa...
<p>Column indicates H9 and P50 strains, row represent a gene. Expression levels are shown in differe...
<p>Hierarchical clustering of the expression fold change values, as compared between MNU and DMSO tr...
<p>The average differential expression profiles (treated minus control) of the genes in the differen...
<p>Each of the 16 columns represents a different contrast between treatment groups, as indicated in ...
<p>Yellow triangles represent up-regulated genes, blue rhombuses indicate down-regulated genes, and ...
<p>The data was plotted as logarithmic values of RQ versus the base-line logarithmic level of expres...
<p>For calculation of the correlation coefficients, we used the fold changes in expression compared ...