<p>Each of the 16 columns represents a different contrast between treatment groups, as indicated in the key to the right, and as illustrated in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0109978#pone-0109978-g001" target="_blank">Figure 1</a>; note that the 13A7 group was the denominator in most of these contrasts. The value of fold-change between contrasted treatments for each gene was indicated by the coloured scale, with red indicating a value>1 and blue indicating a value <1. Genes were clustered into 1-6 groups using the K-means technique, each possessing broadly the same profile across all contrasts.</p
<p>Heat map images showing the genes grouped by the K-means clustering method. Stages are indicated ...
<p>The colors in the map display the relative standing of the reads count data; GREEN indicates a co...
<p>A. Volcano plot for FL vs. NLN comparison. -log<sub>10</sub> p-value is plotted against the fold ...
<p>Fold change was expressed as the ratio of normalized expression of heat to control, and the value...
<p>A heat map for the 3 different treatments across the 4 time points. Log<sub>2</sub> fold change c...
Different color represented fold change of gene expression. Specific fold change values were written...
<p>The heat map of the top 5 genes, both up and down in fold-change, in each comparison group was cr...
<p>The heat map represents the hierarchical clustering of 59 genes being differentially expressed ac...
<p>The heat map represents the hierarchical clustering of 49 genes being differentially expressed ac...
The overall expression patterns across all three treatments groups were visualized for the 3,852 gen...
<p>The heat map depicts the gene expression data of all replicates in a color scheme: red color repr...
Only those genes with a FDR (q) ≤0.01 and fold change ≥5 are included in this map. Data for each gen...
<p>The heatmap was produced by clustering the data matrix of top 30 genes using Pearson correlation....
<p>(A) Colors indicate the significance of fold change (log<sub>2</sub>) values in gene count level....
<div><p>Rows represent genes and columns represent array comparisons between cell populations as ind...
<p>Heat map images showing the genes grouped by the K-means clustering method. Stages are indicated ...
<p>The colors in the map display the relative standing of the reads count data; GREEN indicates a co...
<p>A. Volcano plot for FL vs. NLN comparison. -log<sub>10</sub> p-value is plotted against the fold ...
<p>Fold change was expressed as the ratio of normalized expression of heat to control, and the value...
<p>A heat map for the 3 different treatments across the 4 time points. Log<sub>2</sub> fold change c...
Different color represented fold change of gene expression. Specific fold change values were written...
<p>The heat map of the top 5 genes, both up and down in fold-change, in each comparison group was cr...
<p>The heat map represents the hierarchical clustering of 59 genes being differentially expressed ac...
<p>The heat map represents the hierarchical clustering of 49 genes being differentially expressed ac...
The overall expression patterns across all three treatments groups were visualized for the 3,852 gen...
<p>The heat map depicts the gene expression data of all replicates in a color scheme: red color repr...
Only those genes with a FDR (q) ≤0.01 and fold change ≥5 are included in this map. Data for each gen...
<p>The heatmap was produced by clustering the data matrix of top 30 genes using Pearson correlation....
<p>(A) Colors indicate the significance of fold change (log<sub>2</sub>) values in gene count level....
<div><p>Rows represent genes and columns represent array comparisons between cell populations as ind...
<p>Heat map images showing the genes grouped by the K-means clustering method. Stages are indicated ...
<p>The colors in the map display the relative standing of the reads count data; GREEN indicates a co...
<p>A. Volcano plot for FL vs. NLN comparison. -log<sub>10</sub> p-value is plotted against the fold ...