The distributions of novel SNV and known SNP in each chromosome. Figure S2. A statistical enrichment test (Fisherâs exact test) for detecting enriched non-synonymous SNP site on targeted genes. Figure S3. A statistical enrichment test (Fisherâs exact test) for detecting enriched Indel site on targeted genes. Figure S4. The overall reads mapping rate of assembled contigs for each breed and reference genome by aligning the total sequence reads of each Berkshire sample. (DOCX 3433 kb
Additional file 2: Table S1. Statistics of the resequencing data produced by this study. Table S2. O...
QTL region profiles for litter size at day 5 (LS5) in Landrace in each chromosome. The horizontal re...
Additional file 1: Table S1. Sample information. Table S2. TE reference sequence. Table S3. Primers ...
The result summary of sequence reads mapping using Bowtie2. Table S4. List of candidate genes result...
Additional file 1: Table S1. Primers and annealing temperatures used for PCRs in this research. Tabl...
Figure S1. Manhattan plots illustrating classification of different types of gene expression regulat...
F inbreeding coefficient based on observed and expected autosomal homozygous genotype counts. Figure...
Table S1. Summary of significant chromosome regions including genomic level (0.05/N) for NM in Landr...
The QTLs recorded in the Pig QTL database [ 11 ] are organized based on trait ontology, and we used ...
Table S1. Detail information of used pigs. Table S2. PCR primers used for amplification of pig mitog...
Figure S1. Genetic relationships between individuals before and after removing closely related indiv...
Additional file 1: Table S1. Summary of sequencing statistics (adapted from Bovo et al.[8]). The tab...
Standardized FST values (di) for all studied breeds averaged within ten-SNP sliding windows. (XLSX 4...
Table S1. Detail information of pig L1 families in the pig genome. Table S2. (SINE name and length i...
Genes detected within the strongest diversifying selection signals detected in the studied pig breed...
Additional file 2: Table S1. Statistics of the resequencing data produced by this study. Table S2. O...
QTL region profiles for litter size at day 5 (LS5) in Landrace in each chromosome. The horizontal re...
Additional file 1: Table S1. Sample information. Table S2. TE reference sequence. Table S3. Primers ...
The result summary of sequence reads mapping using Bowtie2. Table S4. List of candidate genes result...
Additional file 1: Table S1. Primers and annealing temperatures used for PCRs in this research. Tabl...
Figure S1. Manhattan plots illustrating classification of different types of gene expression regulat...
F inbreeding coefficient based on observed and expected autosomal homozygous genotype counts. Figure...
Table S1. Summary of significant chromosome regions including genomic level (0.05/N) for NM in Landr...
The QTLs recorded in the Pig QTL database [ 11 ] are organized based on trait ontology, and we used ...
Table S1. Detail information of used pigs. Table S2. PCR primers used for amplification of pig mitog...
Figure S1. Genetic relationships between individuals before and after removing closely related indiv...
Additional file 1: Table S1. Summary of sequencing statistics (adapted from Bovo et al.[8]). The tab...
Standardized FST values (di) for all studied breeds averaged within ten-SNP sliding windows. (XLSX 4...
Table S1. Detail information of pig L1 families in the pig genome. Table S2. (SINE name and length i...
Genes detected within the strongest diversifying selection signals detected in the studied pig breed...
Additional file 2: Table S1. Statistics of the resequencing data produced by this study. Table S2. O...
QTL region profiles for litter size at day 5 (LS5) in Landrace in each chromosome. The horizontal re...
Additional file 1: Table S1. Sample information. Table S2. TE reference sequence. Table S3. Primers ...