Additional file 2: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Additional file 3: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

C. Reimer (5772014)
C.-J. Rubin (5772017)
A. Sharifi (5772020)
N.-T. Ha (5772023)
S. Weigend (5772026)
K.-H. Waldmann (5772029)
O. Distl (5772032)
S. Pant (5772035)
M. Fredholm (5772038)
M. Schlather (5772041)
H. Simianer (5772044)

September 2018

Table S2. Genome-wide estimated FST values between different contrasts of breed groups for all loci ...

Additional file 7: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

C. Reimer (5772014)
C.-J. Rubin (5772017)
A. Sharifi (5772020)
N.-T. Ha (5772023)
S. Weigend (5772026)
K.-H. Waldmann (5772029)
O. Distl (5772032)
S. Pant (5772035)
M. Fredholm (5772038)
M. Schlather (5772041)
H. Simianer (5772044)

September 2018

Table S5. Overview of SNPs in the region from 52 to 61Â Mb on chromosome X, including results of fil...

Additional file 2: of Increased prediction accuracy using a genomic feature model including prior information on quantitative trait locus regions in purebred Danish Duroc pigs

Pernille Sarup (125544)
Just Jensen (447250)
Tage Ostersen (307774)
Mark Henryon (307775)
Peter SĂ¸rensen (3447152)

January 2016

The QTLs recorded in the Pig QTL database [ 11 ] are organized based on trait ontology, and we used ...

Additional file 5: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Katarzyna Ropka-Molik (3908581)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Tomasz Szmatoła (4585621)
Magdalena Szyndler-Nędza (5880602)
Monika Bugno-Poniewierska (3908578)
Tadeusz Blicharski (3440384)
Karolina Szulc (5880605)
Ewa Skrzypczak (5880608)
Jędrzej Krupiński (5880611)

October 2018

REHH P-values for the detected core haplotypes with the highest frequency. (XLSX 730 kb

Additional file 3: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Katarzyna Ropka-Molik (3908581)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Tomasz Szmatoła (4585621)
Magdalena Szyndler-Nędza (5880602)
Monika Bugno-Poniewierska (3908578)
Tadeusz Blicharski (3440384)
Karolina Szulc (5880605)
Ewa Skrzypczak (5880608)
Jędrzej Krupiński (5880611)

October 2018

Genes detected within the strongest diversifying selection signals detected in the studied pig breed...

Additional file 6: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Katarzyna Ropka-Molik (3908581)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Tomasz Szmatoła (4585621)
Magdalena Szyndler-Nędza (5880602)
Monika Bugno-Poniewierska (3908578)
Tadeusz Blicharski (3440384)
Karolina Szulc (5880605)
Ewa Skrzypczak (5880608)
Jędrzej Krupiński (5880611)

October 2018

Genes detected within the strongest within-breed selection signals detected in the studied pig breed...

Additional file 7: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Katarzyna Ropka-Molik (3908581)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Tomasz Szmatoła (4585621)
Magdalena Szyndler-Nędza (5880602)
Monika Bugno-Poniewierska (3908578)
Tadeusz Blicharski (3440384)
Karolina Szulc (5880605)
Ewa Skrzypczak (5880608)
Jędrzej Krupiński (5880611)

October 2018

Comparison of selected phenotypic traits for the studied pig breeds. (DOCX 19 kb

Additional file 4: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Katarzyna Ropka-Molik (3908581)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Tomasz Szmatoła (4585621)
Magdalena Szyndler-Nędza (5880602)
Monika Bugno-Poniewierska (3908578)
Tadeusz Blicharski (3440384)
Karolina Szulc (5880605)
Ewa Skrzypczak (5880608)
Jędrzej Krupiński (5880611)

October 2018

Summary characteristics of core regions (CR) or core haplotypes (CH) in the studied pig breeds. (XLS...

Additional file 2: of Genome-wide detection of selection signatures in Chinese indigenous Laiwu pigs revealed candidate genes regulating fat deposition in muscle

Minhui Chen (332801)
Jiying Wang (122574)
Yanping Wang (275956)
Ying Wu (4463161)
Jinluan Fu (3538919)
Jian-feng Liu (4247419)

May 2018

Table S1. Summary of selected regions under positive selection detected by FST. (XLSX 51 kb

Additional file 10: of Genome-wide detection of selection signatures in Chinese indigenous Laiwu pigs revealed candidate genes regulating fat deposition in muscle

Minhui Chen (332801)
Jiying Wang (122574)
Yanping Wang (275956)
Ying Wu (4463161)
Jinluan Fu (3538919)
Jian-feng Liu (4247419)

May 2018

The ped PLINK file of SNP genotyping data for the 50 Laiwu pigs and 52 Yorkshire pigs. (TXT 21549Â k...

Additional file 11: of Genome-wide detection of selection signatures in Chinese indigenous Laiwu pigs revealed candidate genes regulating fat deposition in muscle

Minhui Chen (332801)
Jiying Wang (122574)
Yanping Wang (275956)
Ying Wu (4463161)
Jinluan Fu (3538919)
Jian-feng Liu (4247419)

May 2018

The map PLINK file of SNP genotyping data for the 50 Laiwu pigs and 52 Yorkshire pigs. (TXT 1544Â kb

Additional file 1 of Associations of genome-wide structural variations with phenotypic differences in cross-bred Eurasian pigs

Wencheng Zong (8025542)
Jinbu Wang (2359150)
Runze Zhao (3401315)
Naiqi Niu (17112914)
Yanfang Su (706280)
Ziping Hu (17112917)
Xin Liu (43569)
Xinhua Hou (108350)
Ligang Wang (347845)
Lixian Wang (465239)
Longchao Zhang (10736706)

October 2023

Additional file 1: Table S1. Sample information. Table S2. TE reference sequence. Table S3. Primers ...

Additional file 1 of Integrated analysis strategy of genome-wide functional gene mining reveals DKK2 gene underlying meat quality in Shaziling synthesized pigs

Shuaihan He (17738512)
Yubei Wang (13945893)
Yabiao Luo (8145774)
Mingming Xue (5424857)
Maisheng Wu (17738515)
Hong Tan (472478)
Yinglin Peng (11313963)
Kejun Wang (801298)
Meiying Fang (107868)

January 2024

Additional file 1: Table S1. Primers and annealing temperatures used for PCRs in this research. Tabl...

A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul
Igor Jasielczuk
Katarzyna Ropka-Molik
Ewelina Semik-Gurgul
Klaudia Pawlina-Tyszko
Tomasz Szmatoła
Magdalena Szyndler-Nędza
Monika Bugno-Poniewierska
Tadeusz Blicharski
Karolina Szulc
Ewa Skrzypczak
Jędrzej Krupiński

October 2018

Abstract Background Identification of selection signatures can provide a direct insight into the mec...

Additional file 1: of Genome-wide detection of selection signatures in Chinese indigenous Laiwu pigs revealed candidate genes regulating fat deposition in muscle

Minhui Chen (332801)
Jiying Wang (122574)
Yanping Wang (275956)
Ying Wu (4463161)
Jinluan Fu (3538919)
Jian-feng Liu (4247419)

May 2018

Figure S1. Genetic relationships between individuals before and after removing closely related indiv...

Additional file 3: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

C. Reimer (5772014)
C.-J. Rubin (5772017)
A. Sharifi (5772020)
N.-T. Ha (5772023)
S. Weigend (5772026)
K.-H. Waldmann (5772029)
O. Distl (5772032)
S. Pant (5772035)
M. Fredholm (5772038)
M. Schlather (5772041)
H. Simianer (5772044)

September 2018

Table S2. Genome-wide estimated FST values between different contrasts of breed groups for all loci ...

Additional file 7: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

C. Reimer (5772014)
C.-J. Rubin (5772017)
A. Sharifi (5772020)
N.-T. Ha (5772023)
S. Weigend (5772026)
K.-H. Waldmann (5772029)
O. Distl (5772032)
S. Pant (5772035)
M. Fredholm (5772038)
M. Schlather (5772041)
H. Simianer (5772044)

September 2018

Table S5. Overview of SNPs in the region from 52 to 61Â Mb on chromosome X, including results of fil...

Additional file 2: of Increased prediction accuracy using a genomic feature model including prior information on quantitative trait locus regions in purebred Danish Duroc pigs

Pernille Sarup (125544)
Just Jensen (447250)
Tage Ostersen (307774)
Mark Henryon (307775)
Peter SĂ¸rensen (3447152)

January 2016

The QTLs recorded in the Pig QTL database [ 11 ] are organized based on trait ontology, and we used ...

Additional file 5: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Katarzyna Ropka-Molik (3908581)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Tomasz Szmatoła (4585621)
Magdalena Szyndler-Nędza (5880602)
Monika Bugno-Poniewierska (3908578)
Tadeusz Blicharski (3440384)
Karolina Szulc (5880605)
Ewa Skrzypczak (5880608)
Jędrzej Krupiński (5880611)

October 2018

REHH P-values for the detected core haplotypes with the highest frequency. (XLSX 730 kb

Additional file 3: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Katarzyna Ropka-Molik (3908581)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Tomasz Szmatoła (4585621)
Magdalena Szyndler-Nędza (5880602)
Monika Bugno-Poniewierska (3908578)
Tadeusz Blicharski (3440384)
Karolina Szulc (5880605)
Ewa Skrzypczak (5880608)
Jędrzej Krupiński (5880611)

October 2018

Genes detected within the strongest diversifying selection signals detected in the studied pig breed...

Additional file 6: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Katarzyna Ropka-Molik (3908581)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Tomasz Szmatoła (4585621)
Magdalena Szyndler-Nędza (5880602)
Monika Bugno-Poniewierska (3908578)
Tadeusz Blicharski (3440384)
Karolina Szulc (5880605)
Ewa Skrzypczak (5880608)
Jędrzej Krupiński (5880611)

October 2018

Genes detected within the strongest within-breed selection signals detected in the studied pig breed...

Additional file 7: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Katarzyna Ropka-Molik (3908581)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Tomasz Szmatoła (4585621)
Magdalena Szyndler-Nędza (5880602)
Monika Bugno-Poniewierska (3908578)
Tadeusz Blicharski (3440384)
Karolina Szulc (5880605)
Ewa Skrzypczak (5880608)
Jędrzej Krupiński (5880611)

October 2018

Comparison of selected phenotypic traits for the studied pig breeds. (DOCX 19 kb

Additional file 4: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Katarzyna Ropka-Molik (3908581)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Tomasz Szmatoła (4585621)
Magdalena Szyndler-Nędza (5880602)
Monika Bugno-Poniewierska (3908578)
Tadeusz Blicharski (3440384)
Karolina Szulc (5880605)
Ewa Skrzypczak (5880608)
Jędrzej Krupiński (5880611)

October 2018

Summary characteristics of core regions (CR) or core haplotypes (CH) in the studied pig breeds. (XLS...

Additional file 2: of Genome-wide detection of selection signatures in Chinese indigenous Laiwu pigs revealed candidate genes regulating fat deposition in muscle

Minhui Chen (332801)
Jiying Wang (122574)
Yanping Wang (275956)
Ying Wu (4463161)
Jinluan Fu (3538919)
Jian-feng Liu (4247419)

May 2018

Table S1. Summary of selected regions under positive selection detected by FST. (XLSX 51 kb

Additional file 10: of Genome-wide detection of selection signatures in Chinese indigenous Laiwu pigs revealed candidate genes regulating fat deposition in muscle

Minhui Chen (332801)
Jiying Wang (122574)
Yanping Wang (275956)
Ying Wu (4463161)
Jinluan Fu (3538919)
Jian-feng Liu (4247419)

May 2018

The ped PLINK file of SNP genotyping data for the 50 Laiwu pigs and 52 Yorkshire pigs. (TXT 21549Â k...

Additional file 11: of Genome-wide detection of selection signatures in Chinese indigenous Laiwu pigs revealed candidate genes regulating fat deposition in muscle

Minhui Chen (332801)
Jiying Wang (122574)
Yanping Wang (275956)
Ying Wu (4463161)
Jinluan Fu (3538919)
Jian-feng Liu (4247419)

May 2018

The map PLINK file of SNP genotyping data for the 50 Laiwu pigs and 52 Yorkshire pigs. (TXT 1544Â kb

Additional file 1 of Associations of genome-wide structural variations with phenotypic differences in cross-bred Eurasian pigs

Wencheng Zong (8025542)
Jinbu Wang (2359150)
Runze Zhao (3401315)
Naiqi Niu (17112914)
Yanfang Su (706280)
Ziping Hu (17112917)
Xin Liu (43569)
Xinhua Hou (108350)
Ligang Wang (347845)
Lixian Wang (465239)
Longchao Zhang (10736706)

October 2023

Additional file 1: Table S1. Sample information. Table S2. TE reference sequence. Table S3. Primers ...

Additional file 1 of Integrated analysis strategy of genome-wide functional gene mining reveals DKK2 gene underlying meat quality in Shaziling synthesized pigs

Shuaihan He (17738512)
Yubei Wang (13945893)
Yabiao Luo (8145774)
Mingming Xue (5424857)
Maisheng Wu (17738515)
Hong Tan (472478)
Yinglin Peng (11313963)
Kejun Wang (801298)
Meiying Fang (107868)

January 2024

Additional file 1: Table S1. Primers and annealing temperatures used for PCRs in this research. Tabl...

A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul
Igor Jasielczuk
Katarzyna Ropka-Molik
Ewelina Semik-Gurgul
Klaudia Pawlina-Tyszko
Tomasz Szmatoła
Magdalena Szyndler-Nędza
Monika Bugno-Poniewierska
Tadeusz Blicharski
Karolina Szulc
Ewa Skrzypczak
Jędrzej Krupiński

October 2018

Abstract Background Identification of selection signatures can provide a direct insight into the mec...

Additional file 1: of Genome-wide detection of selection signatures in Chinese indigenous Laiwu pigs revealed candidate genes regulating fat deposition in muscle

Minhui Chen (332801)
Jiying Wang (122574)
Yanping Wang (275956)
Ying Wu (4463161)
Jinluan Fu (3538919)
Jian-feng Liu (4247419)

May 2018

Figure S1. Genetic relationships between individuals before and after removing closely related indiv...

Additional file 3: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

C. Reimer (5772014)
C.-J. Rubin (5772017)
A. Sharifi (5772020)
N.-T. Ha (5772023)
S. Weigend (5772026)
K.-H. Waldmann (5772029)
O. Distl (5772032)
S. Pant (5772035)
M. Fredholm (5772038)
M. Schlather (5772041)
H. Simianer (5772044)

September 2018

Table S2. Genome-wide estimated FST values between different contrasts of breed groups for all loci ...

Additional file 7: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

C. Reimer (5772014)
C.-J. Rubin (5772017)
A. Sharifi (5772020)
N.-T. Ha (5772023)
S. Weigend (5772026)
K.-H. Waldmann (5772029)
O. Distl (5772032)
S. Pant (5772035)
M. Fredholm (5772038)
M. Schlather (5772041)
H. Simianer (5772044)

September 2018

Table S5. Overview of SNPs in the region from 52 to 61Â Mb on chromosome X, including results of fil...

Additional file 2: of Increased prediction accuracy using a genomic feature model including prior information on quantitative trait locus regions in purebred Danish Duroc pigs

Pernille Sarup (125544)
Just Jensen (447250)
Tage Ostersen (307774)
Mark Henryon (307775)
Peter SĂ¸rensen (3447152)

January 2016

The QTLs recorded in the Pig QTL database [ 11 ] are organized based on trait ontology, and we used ...

Additional file 2: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Abstract

Extracted data

Additional file 2: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Abstract

Extracted data

Related items

Related items