Additional file 3: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Additional file 1 of Insights into the architecture of human-induced polygenic selection in Duroc pigs

Zitao Chen (6433136)
Jinyan Teng (5705546)
Shuqi Diao (8666547)
Zhiting Xu (13835347)
Shaopan Ye (4987505)
Dingjie Qiu (13835350)
Zhe Zhang (81603)
Yuchun Pan (102909)
Jiaqi Li (220961)
Qin Zhang (58638)
Zhe Zhang (9711115)

September 2022

Additional file 1: Fig. S1. The distribution (A) and functional classification (B) of the detected s...

Additional file 9 of Insights into the architecture of human-induced polygenic selection in Duroc pigs

Zitao Chen (6433136)
Jinyan Teng (5705546)
Shuqi Diao (8666547)
Zhiting Xu (13835347)
Shaopan Ye (4987505)
Dingjie Qiu (13835350)
Zhe Zhang (81603)
Yuchun Pan (102909)
Jiaqi Li (220961)
Qin Zhang (58638)
Zhe Zhang (9711115)

September 2022

Additional file 9: Fig. S9. QTL enrichment results of the potential selection regions around rs34633...

Signatures of Diversifying Selection in European Pig Breeds

Samantha Wilkinson (407316)
Zen H. Lu (407317)
Hendrik-Jan Megens (116285)
Alan L. Archibald (261277)
Chris Haley (384245)
Ian J. Jackson (215017)
Martien A. M. Groenen (116301)
Richard P. M. A. Crooijmans (116297)
Rob Ogden (145264)
Pamela Wiener (79725)

April 2013

<div><p>Following domestication, livestock breeds have experienced intense selection pressures for t...

Additional file 6: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Katarzyna Ropka-Molik (3908581)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Tomasz Szmatoła (4585621)
Magdalena Szyndler-Nędza (5880602)
Monika Bugno-Poniewierska (3908578)
Tadeusz Blicharski (3440384)
Karolina Szulc (5880605)
Ewa Skrzypczak (5880608)
Jędrzej Krupiński (5880611)

October 2018

Genes detected within the strongest within-breed selection signals detected in the studied pig breed...

Additional file 7: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Katarzyna Ropka-Molik (3908581)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Tomasz Szmatoła (4585621)
Magdalena Szyndler-Nędza (5880602)
Monika Bugno-Poniewierska (3908578)
Tadeusz Blicharski (3440384)
Karolina Szulc (5880605)
Ewa Skrzypczak (5880608)
Jędrzej Krupiński (5880611)

October 2018

Comparison of selected phenotypic traits for the studied pig breeds. (DOCX 19 kb

Additional file 4: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Katarzyna Ropka-Molik (3908581)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Tomasz Szmatoła (4585621)
Magdalena Szyndler-Nędza (5880602)
Monika Bugno-Poniewierska (3908578)
Tadeusz Blicharski (3440384)
Karolina Szulc (5880605)
Ewa Skrzypczak (5880608)
Jędrzej Krupiński (5880611)

October 2018

Summary characteristics of core regions (CR) or core haplotypes (CH) in the studied pig breeds. (XLS...

Additional file 5: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Katarzyna Ropka-Molik (3908581)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Tomasz Szmatoła (4585621)
Magdalena Szyndler-Nędza (5880602)
Monika Bugno-Poniewierska (3908578)
Tadeusz Blicharski (3440384)
Karolina Szulc (5880605)
Ewa Skrzypczak (5880608)
Jędrzej Krupiński (5880611)

October 2018

REHH P-values for the detected core haplotypes with the highest frequency. (XLSX 730 kb

Additional file 2: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Katarzyna Ropka-Molik (3908581)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Tomasz Szmatoła (4585621)
Magdalena Szyndler-Nędza (5880602)
Monika Bugno-Poniewierska (3908578)
Tadeusz Blicharski (3440384)
Karolina Szulc (5880605)
Ewa Skrzypczak (5880608)
Jędrzej Krupiński (5880611)

October 2018

Standardized FST values (di) for all studied breeds averaged within ten-SNP sliding windows. (XLSX 4...

A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul
Igor Jasielczuk
Katarzyna Ropka-Molik
Ewelina Semik-Gurgul
Klaudia Pawlina-Tyszko
Tomasz Szmatoła
Magdalena Szyndler-Nędza
Monika Bugno-Poniewierska
Tadeusz Blicharski
Karolina Szulc
Ewa Skrzypczak
Jędrzej Krupiński

October 2018

Abstract Background Identification of selection signatures can provide a direct insight into the mec...

Additional file 2: of Genome-wide detection of selection signatures in Chinese indigenous Laiwu pigs revealed candidate genes regulating fat deposition in muscle

Minhui Chen (332801)
Jiying Wang (122574)
Yanping Wang (275956)
Ying Wu (4463161)
Jinluan Fu (3538919)
Jian-feng Liu (4247419)

May 2018

Table S1. Summary of selected regions under positive selection detected by FST. (XLSX 51 kb

Additional file 10: of Genome-wide detection of selection signatures in Chinese indigenous Laiwu pigs revealed candidate genes regulating fat deposition in muscle

Minhui Chen (332801)
Jiying Wang (122574)
Yanping Wang (275956)
Ying Wu (4463161)
Jinluan Fu (3538919)
Jian-feng Liu (4247419)

May 2018

The ped PLINK file of SNP genotyping data for the 50 Laiwu pigs and 52 Yorkshire pigs. (TXT 21549Â k...

Additional file 11: of Genome-wide detection of selection signatures in Chinese indigenous Laiwu pigs revealed candidate genes regulating fat deposition in muscle

Minhui Chen (332801)
Jiying Wang (122574)
Yanping Wang (275956)
Ying Wu (4463161)
Jinluan Fu (3538919)
Jian-feng Liu (4247419)

May 2018

The map PLINK file of SNP genotyping data for the 50 Laiwu pigs and 52 Yorkshire pigs. (TXT 1544Â kb

Additional file 1: of Genome-wide detection of selection signatures in Chinese indigenous Laiwu pigs revealed candidate genes regulating fat deposition in muscle

Minhui Chen (332801)
Jiying Wang (122574)
Yanping Wang (275956)
Ying Wu (4463161)
Jinluan Fu (3538919)
Jian-feng Liu (4247419)

May 2018

Figure S1. Genetic relationships between individuals before and after removing closely related indiv...

Additional file 7: of Genome-wide detection of selection signatures in Chinese indigenous Laiwu pigs revealed candidate genes regulating fat deposition in muscle

Minhui Chen (332801)
Jiying Wang (122574)
Yanping Wang (275956)
Ying Wu (4463161)
Jinluan Fu (3538919)
Jian-feng Liu (4247419)

May 2018

Table S6. Significantly enriched Gene Ontology terms of candidate genes. (XLSX 12Â kb

Additional file 1 of Integrated analysis strategy of genome-wide functional gene mining reveals DKK2 gene underlying meat quality in Shaziling synthesized pigs

Shuaihan He (17738512)
Yubei Wang (13945893)
Yabiao Luo (8145774)
Mingming Xue (5424857)
Maisheng Wu (17738515)
Hong Tan (472478)
Yinglin Peng (11313963)
Kejun Wang (801298)
Meiying Fang (107868)

January 2024

Additional file 1: Table S1. Primers and annealing temperatures used for PCRs in this research. Tabl...

Additional file 1 of Insights into the architecture of human-induced polygenic selection in Duroc pigs

Zitao Chen (6433136)
Jinyan Teng (5705546)
Shuqi Diao (8666547)
Zhiting Xu (13835347)
Shaopan Ye (4987505)
Dingjie Qiu (13835350)
Zhe Zhang (81603)
Yuchun Pan (102909)
Jiaqi Li (220961)
Qin Zhang (58638)
Zhe Zhang (9711115)

September 2022

Additional file 1: Fig. S1. The distribution (A) and functional classification (B) of the detected s...

Additional file 9 of Insights into the architecture of human-induced polygenic selection in Duroc pigs

Zitao Chen (6433136)
Jinyan Teng (5705546)
Shuqi Diao (8666547)
Zhiting Xu (13835347)
Shaopan Ye (4987505)
Dingjie Qiu (13835350)
Zhe Zhang (81603)
Yuchun Pan (102909)
Jiaqi Li (220961)
Qin Zhang (58638)
Zhe Zhang (9711115)

September 2022

Additional file 9: Fig. S9. QTL enrichment results of the potential selection regions around rs34633...

Signatures of Diversifying Selection in European Pig Breeds

Samantha Wilkinson (407316)
Zen H. Lu (407317)
Hendrik-Jan Megens (116285)
Alan L. Archibald (261277)
Chris Haley (384245)
Ian J. Jackson (215017)
Martien A. M. Groenen (116301)
Richard P. M. A. Crooijmans (116297)
Rob Ogden (145264)
Pamela Wiener (79725)

April 2013

<div><p>Following domestication, livestock breeds have experienced intense selection pressures for t...

Additional file 6: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Katarzyna Ropka-Molik (3908581)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Tomasz Szmatoła (4585621)
Magdalena Szyndler-Nędza (5880602)
Monika Bugno-Poniewierska (3908578)
Tadeusz Blicharski (3440384)
Karolina Szulc (5880605)
Ewa Skrzypczak (5880608)
Jędrzej Krupiński (5880611)

October 2018

Genes detected within the strongest within-breed selection signals detected in the studied pig breed...

Additional file 7: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Katarzyna Ropka-Molik (3908581)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Tomasz Szmatoła (4585621)
Magdalena Szyndler-Nędza (5880602)
Monika Bugno-Poniewierska (3908578)
Tadeusz Blicharski (3440384)
Karolina Szulc (5880605)
Ewa Skrzypczak (5880608)
Jędrzej Krupiński (5880611)

October 2018

Comparison of selected phenotypic traits for the studied pig breeds. (DOCX 19 kb

Additional file 4: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Katarzyna Ropka-Molik (3908581)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Tomasz Szmatoła (4585621)
Magdalena Szyndler-Nędza (5880602)
Monika Bugno-Poniewierska (3908578)
Tadeusz Blicharski (3440384)
Karolina Szulc (5880605)
Ewa Skrzypczak (5880608)
Jędrzej Krupiński (5880611)

October 2018

Summary characteristics of core regions (CR) or core haplotypes (CH) in the studied pig breeds. (XLS...

Additional file 5: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Katarzyna Ropka-Molik (3908581)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Tomasz Szmatoła (4585621)
Magdalena Szyndler-Nędza (5880602)
Monika Bugno-Poniewierska (3908578)
Tadeusz Blicharski (3440384)
Karolina Szulc (5880605)
Ewa Skrzypczak (5880608)
Jędrzej Krupiński (5880611)

October 2018

REHH P-values for the detected core haplotypes with the highest frequency. (XLSX 730 kb

Additional file 2: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul (825970)
Igor Jasielczuk (825972)
Katarzyna Ropka-Molik (3908581)
Ewelina Semik-Gurgul (5880599)
Klaudia Pawlina-Tyszko (4814556)
Tomasz Szmatoła (4585621)
Magdalena Szyndler-Nędza (5880602)
Monika Bugno-Poniewierska (3908578)
Tadeusz Blicharski (3440384)
Karolina Szulc (5880605)
Ewa Skrzypczak (5880608)
Jędrzej Krupiński (5880611)

October 2018

Standardized FST values (di) for all studied breeds averaged within ten-SNP sliding windows. (XLSX 4...

A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Artur Gurgul
Igor Jasielczuk
Katarzyna Ropka-Molik
Ewelina Semik-Gurgul
Klaudia Pawlina-Tyszko
Tomasz Szmatoła
Magdalena Szyndler-Nędza
Monika Bugno-Poniewierska
Tadeusz Blicharski
Karolina Szulc
Ewa Skrzypczak
Jędrzej Krupiński

October 2018

Abstract Background Identification of selection signatures can provide a direct insight into the mec...

Additional file 2: of Genome-wide detection of selection signatures in Chinese indigenous Laiwu pigs revealed candidate genes regulating fat deposition in muscle

Minhui Chen (332801)
Jiying Wang (122574)
Yanping Wang (275956)
Ying Wu (4463161)
Jinluan Fu (3538919)
Jian-feng Liu (4247419)

May 2018

Table S1. Summary of selected regions under positive selection detected by FST. (XLSX 51 kb

Additional file 10: of Genome-wide detection of selection signatures in Chinese indigenous Laiwu pigs revealed candidate genes regulating fat deposition in muscle

Minhui Chen (332801)
Jiying Wang (122574)
Yanping Wang (275956)
Ying Wu (4463161)
Jinluan Fu (3538919)
Jian-feng Liu (4247419)

May 2018

The ped PLINK file of SNP genotyping data for the 50 Laiwu pigs and 52 Yorkshire pigs. (TXT 21549Â k...

Additional file 11: of Genome-wide detection of selection signatures in Chinese indigenous Laiwu pigs revealed candidate genes regulating fat deposition in muscle

Minhui Chen (332801)
Jiying Wang (122574)
Yanping Wang (275956)
Ying Wu (4463161)
Jinluan Fu (3538919)
Jian-feng Liu (4247419)

May 2018

The map PLINK file of SNP genotyping data for the 50 Laiwu pigs and 52 Yorkshire pigs. (TXT 1544Â kb

Additional file 1: of Genome-wide detection of selection signatures in Chinese indigenous Laiwu pigs revealed candidate genes regulating fat deposition in muscle

Minhui Chen (332801)
Jiying Wang (122574)
Yanping Wang (275956)
Ying Wu (4463161)
Jinluan Fu (3538919)
Jian-feng Liu (4247419)

May 2018

Figure S1. Genetic relationships between individuals before and after removing closely related indiv...

Additional file 7: of Genome-wide detection of selection signatures in Chinese indigenous Laiwu pigs revealed candidate genes regulating fat deposition in muscle

Minhui Chen (332801)
Jiying Wang (122574)
Yanping Wang (275956)
Ying Wu (4463161)
Jinluan Fu (3538919)
Jian-feng Liu (4247419)

May 2018

Table S6. Significantly enriched Gene Ontology terms of candidate genes. (XLSX 12Â kb

Additional file 1 of Integrated analysis strategy of genome-wide functional gene mining reveals DKK2 gene underlying meat quality in Shaziling synthesized pigs

Shuaihan He (17738512)
Yubei Wang (13945893)
Yabiao Luo (8145774)
Mingming Xue (5424857)
Maisheng Wu (17738515)
Hong Tan (472478)
Yinglin Peng (11313963)
Kejun Wang (801298)
Meiying Fang (107868)

January 2024

Additional file 1: Table S1. Primers and annealing temperatures used for PCRs in this research. Tabl...

Additional file 1 of Insights into the architecture of human-induced polygenic selection in Duroc pigs

Zitao Chen (6433136)
Jinyan Teng (5705546)
Shuqi Diao (8666547)
Zhiting Xu (13835347)
Shaopan Ye (4987505)
Dingjie Qiu (13835350)
Zhe Zhang (81603)
Yuchun Pan (102909)
Jiaqi Li (220961)
Qin Zhang (58638)
Zhe Zhang (9711115)

September 2022

Additional file 1: Fig. S1. The distribution (A) and functional classification (B) of the detected s...

Additional file 9 of Insights into the architecture of human-induced polygenic selection in Duroc pigs

Zitao Chen (6433136)
Jinyan Teng (5705546)
Shuqi Diao (8666547)
Zhiting Xu (13835347)
Shaopan Ye (4987505)
Dingjie Qiu (13835350)
Zhe Zhang (81603)
Yuchun Pan (102909)
Jiaqi Li (220961)
Qin Zhang (58638)
Zhe Zhang (9711115)

September 2022

Additional file 9: Fig. S9. QTL enrichment results of the potential selection regions around rs34633...

Signatures of Diversifying Selection in European Pig Breeds

Samantha Wilkinson (407316)
Zen H. Lu (407317)
Hendrik-Jan Megens (116285)
Alan L. Archibald (261277)
Chris Haley (384245)
Ian J. Jackson (215017)
Martien A. M. Groenen (116301)
Richard P. M. A. Crooijmans (116297)
Rob Ogden (145264)
Pamela Wiener (79725)

April 2013

<div><p>Following domestication, livestock breeds have experienced intense selection pressures for t...

Additional file 3: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Abstract

Extracted data

Additional file 3: of A genome-wide detection of selection signatures in conserved and commercial pig breeds maintained in Poland

Abstract

Extracted data

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