Additional file 2: Table S1. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Additional file 3; Table S2. of Dissecting combining ability effect in a rice NCII-III population provides insights into heterosis in indica-japonica cross

Hao Zhou (136535)
Duo Xia (4398898)
Jing Zeng (105826)
Gonghao Jiang (4398901)
Yuqing He (382360)

August 2017

Detailed information for QTLs detected in ZS97 × DHs and SCA effects. (DOCX 16 kb

Additional file 1: of Carbohydrate metabolism and fertility related genes high expression levels promote heterosis in autotetraploid rice harboring double neutral genes

Lin Chen (54305)
Yun Yuan (748928)
Jinwen Wu (3722080)
Zhixiong Chen (3115491)
Lan Wang (85307)
Muhammad Shahid (536390)
Xiangdong Liu (79858)

May 2019

Table S1. Heterosis analysis of hybrids generated by the crossing of T449 and neo-tetraploid rice li...

Additional file 2: of QTL mapping and candidate gene analysis of peduncle vascular bundle related traits in rice by genome-wide association study

Laiyuan Zhai (4917016)
Tianqing Zheng (635384)
Xinyu Wang (341591)
Yun Wang (32846)
Kai Chen (129938)
Shu Wang (180520)
Jianlong Xu (841260)
Zhikang Li (416310)

March 2018

Table S1. List of the 423 accessions including country of origin, subpopulation (indica, temperate j...

Additional file 3: Table S2. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Chi square values of microsatellite markers showing segregation distortion among F2 population of Ba...

Additional file 8: Table S5. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Quantitative trait loci (QTLs) detected in theÂ RIL population derived from Basmati370/Jaya. (DOC 38...

Additional file 7: Table S4. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Quantitative trait loci (QTLs) detected in F3 population of Basmati370/Jaya. (DOC 35 kb

Additional file 1: Figure S1. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

The grain appearance traits before and after cooking in the Basmati370, Jaya, F1 and selected F2 ind...

Additional file 9: Table S6 of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

The genes with non-synonymous SNPs in the QTL for filled grain qFG1.1. (RM11968-RM14). (DOC 65 kb

Additional file 10: Table S7 of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

The genes with non-synonymous SNPs in the QTL for chalkiness qCHK4.1. (RM564-RM348) (DOC 168 kb

Additional file 5: Figure S3. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Phenotypic distributions of agronomic traits in F3 population derived from a cross between Basmati37...

Additional file 2: of Genomic selection of agronomic traits in hybrid rice using an NCII population

Yang Xu (178421)
Xin Wang (91924)
Xiaowen Ding (1770013)
Xingfei Zheng (186177)
Zefeng Yang (380119)
Chenwu Xu (380123)
Zhongli Hu (186181)

May 2018

Table S2. The predicted top 100 crosses for eight agronomic traits. (XLSX 33Â kb

Additional file 1: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S1. List of all rice accessions used for SNP genotyping. Rice accessions are tabled with their...

Additional file 2: of Genome sequencing of rice subspecies and genetic analysis of recombinant lines reveals regional yield- and quality-associated loci

Xiukun Li (4783458)
Lian Wu (166932)
Jiahong Wang (407742)
Jian Sun (27858)
Xiuhong Xia (4783461)
Xin Geng (571200)
Xuhong Wang (4783464)
Zhengjin Xu (4783467)
Quan Xu (554774)

September 2018

Figure S2. Collinearity between the bin map derived from the RIL population and the reference genome...

Additional file 3: of Genome-wide association study of agronomic traits in rice cultivated in temperate regions

Juan Reig-Valiente (3435071)
Luis Marqués (3435083)
Manuel Talón (52294)
Concha Domingo (3435080)

September 2018

Table S3. Number of alleles carried by the 20 plants with the highest and the lowest value for each ...

Additional file 3: Table S1. of Identification of bakanae disease resistance loci in japonica rice through genome wide association study

Andrea Volante (141325)
Alessandro Tondelli (3167490)
Maria Aragona (4098790)
Maria Valente (4098793)
Chiara Biselli (114669)
Francesca Desiderio (2588137)
Paolo Bagnaresi (84939)
Slavica Matic (4098787)
Maria Gullino (3579608)
Alessandro Infantino (4098784)
Davide Spadaro (1525594)
Giampiero ValĂ¨ (3486386)

June 2017

Genetic diversity (A), Genetic divergence (FST) (B) and marker density (C) estimates computed for th...

Additional file 3; Table S2. of Dissecting combining ability effect in a rice NCII-III population provides insights into heterosis in indica-japonica cross

Hao Zhou (136535)
Duo Xia (4398898)
Jing Zeng (105826)
Gonghao Jiang (4398901)
Yuqing He (382360)

August 2017

Detailed information for QTLs detected in ZS97 × DHs and SCA effects. (DOCX 16 kb

Additional file 1: of Carbohydrate metabolism and fertility related genes high expression levels promote heterosis in autotetraploid rice harboring double neutral genes

Lin Chen (54305)
Yun Yuan (748928)
Jinwen Wu (3722080)
Zhixiong Chen (3115491)
Lan Wang (85307)
Muhammad Shahid (536390)
Xiangdong Liu (79858)

May 2019

Table S1. Heterosis analysis of hybrids generated by the crossing of T449 and neo-tetraploid rice li...

Additional file 2: of QTL mapping and candidate gene analysis of peduncle vascular bundle related traits in rice by genome-wide association study

Laiyuan Zhai (4917016)
Tianqing Zheng (635384)
Xinyu Wang (341591)
Yun Wang (32846)
Kai Chen (129938)
Shu Wang (180520)
Jianlong Xu (841260)
Zhikang Li (416310)

March 2018

Table S1. List of the 423 accessions including country of origin, subpopulation (indica, temperate j...

Additional file 3: Table S2. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Chi square values of microsatellite markers showing segregation distortion among F2 population of Ba...

Additional file 8: Table S5. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Quantitative trait loci (QTLs) detected in theÂ RIL population derived from Basmati370/Jaya. (DOC 38...

Additional file 7: Table S4. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Quantitative trait loci (QTLs) detected in F3 population of Basmati370/Jaya. (DOC 35 kb

Additional file 1: Figure S1. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

The grain appearance traits before and after cooking in the Basmati370, Jaya, F1 and selected F2 ind...

Additional file 9: Table S6 of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

The genes with non-synonymous SNPs in the QTL for filled grain qFG1.1. (RM11968-RM14). (DOC 65 kb

Additional file 10: Table S7 of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

The genes with non-synonymous SNPs in the QTL for chalkiness qCHK4.1. (RM564-RM348) (DOC 168 kb

Additional file 5: Figure S3. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Phenotypic distributions of agronomic traits in F3 population derived from a cross between Basmati37...

Additional file 2: of Genomic selection of agronomic traits in hybrid rice using an NCII population

Yang Xu (178421)
Xin Wang (91924)
Xiaowen Ding (1770013)
Xingfei Zheng (186177)
Zefeng Yang (380119)
Chenwu Xu (380123)
Zhongli Hu (186181)

May 2018

Table S2. The predicted top 100 crosses for eight agronomic traits. (XLSX 33Â kb

Additional file 1: of Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Chakkree Lekklar (6253412)
Monnat Pongpanich (5895068)
Duangjai Suriya-arunroj (6253415)
Aumnart Chinpongpanich (6055790)
Helen Tsai (6253418)
Luca Comai (13000)
Supachitra Chadchawan (5597243)
Teerapong Buaboocha (68666)

January 2019

Table S1. List of all rice accessions used for SNP genotyping. Rice accessions are tabled with their...

Additional file 2: of Genome sequencing of rice subspecies and genetic analysis of recombinant lines reveals regional yield- and quality-associated loci

Xiukun Li (4783458)
Lian Wu (166932)
Jiahong Wang (407742)
Jian Sun (27858)
Xiuhong Xia (4783461)
Xin Geng (571200)
Xuhong Wang (4783464)
Zhengjin Xu (4783467)
Quan Xu (554774)

September 2018

Figure S2. Collinearity between the bin map derived from the RIL population and the reference genome...

Additional file 3: of Genome-wide association study of agronomic traits in rice cultivated in temperate regions

Juan Reig-Valiente (3435071)
Luis Marqués (3435083)
Manuel Talón (52294)
Concha Domingo (3435080)

September 2018

Table S3. Number of alleles carried by the 20 plants with the highest and the lowest value for each ...

Additional file 3: Table S1. of Identification of bakanae disease resistance loci in japonica rice through genome wide association study

Andrea Volante (141325)
Alessandro Tondelli (3167490)
Maria Aragona (4098790)
Maria Valente (4098793)
Chiara Biselli (114669)
Francesca Desiderio (2588137)
Paolo Bagnaresi (84939)
Slavica Matic (4098787)
Maria Gullino (3579608)
Alessandro Infantino (4098784)
Davide Spadaro (1525594)
Giampiero ValĂ¨ (3486386)

June 2017

Genetic diversity (A), Genetic divergence (FST) (B) and marker density (C) estimates computed for th...

Additional file 3; Table S2. of Dissecting combining ability effect in a rice NCII-III population provides insights into heterosis in indica-japonica cross

Hao Zhou (136535)
Duo Xia (4398898)
Jing Zeng (105826)
Gonghao Jiang (4398901)
Yuqing He (382360)

August 2017

Detailed information for QTLs detected in ZS97 × DHs and SCA effects. (DOCX 16 kb

Additional file 1: of Carbohydrate metabolism and fertility related genes high expression levels promote heterosis in autotetraploid rice harboring double neutral genes

Lin Chen (54305)
Yun Yuan (748928)
Jinwen Wu (3722080)
Zhixiong Chen (3115491)
Lan Wang (85307)
Muhammad Shahid (536390)
Xiangdong Liu (79858)

May 2019

Table S1. Heterosis analysis of hybrids generated by the crossing of T449 and neo-tetraploid rice li...

Additional file 2: of QTL mapping and candidate gene analysis of peduncle vascular bundle related traits in rice by genome-wide association study

Laiyuan Zhai (4917016)
Tianqing Zheng (635384)
Xinyu Wang (341591)
Yun Wang (32846)
Kai Chen (129938)
Shu Wang (180520)
Jianlong Xu (841260)
Zhikang Li (416310)

March 2018

Table S1. List of the 423 accessions including country of origin, subpopulation (indica, temperate j...

Additional file 2: Table S1. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Abstract

Extracted data

Additional file 2: Table S1. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Abstract

Extracted data

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