Additional file 7: Table S4. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Additional file 7: of QTL mapping and candidate gene analysis of peduncle vascular bundle related traits in rice by genome-wide association study

Laiyuan Zhai (4917016)
Tianqing Zheng (635384)
Xinyu Wang (341591)
Yun Wang (32846)
Kai Chen (129938)
Shu Wang (180520)
Jianlong Xu (841260)
Zhikang Li (416310)

March 2018

Figure S5. Comparisons of heading date, grain number per panicle and plant height among different ha...

Additional file 4: Figure S3. of Identification of bakanae disease resistance loci in japonica rice through genome wide association study

Andrea Volante (141325)
Alessandro Tondelli (3167490)
Maria Aragona (4098790)
Maria Valente (4098793)
Chiara Biselli (114669)
Francesca Desiderio (2588137)
Paolo Bagnaresi (84939)
Slavica Matic (4098787)
Maria Gullino (3579608)
Alessandro Infantino (4098784)
Davide Spadaro (1525594)
Giampiero ValĂ¨ (3486386)

June 2017

Details of the two QTL (on chromosomes Os1 and Os4) associated to bakanae disease resistance in the ...

Additional file 3: of Genome-wide association study of agronomic traits in rice cultivated in temperate regions

Juan Reig-Valiente (3435071)
Luis Marqués (3435083)
Manuel Talón (52294)
Concha Domingo (3435080)

September 2018

Table S3. Number of alleles carried by the 20 plants with the highest and the lowest value for each ...

Additional file 8: Table S5. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Quantitative trait loci (QTLs) detected in theÂ RIL population derived from Basmati370/Jaya. (DOC 38...

Additional file 3: Table S2. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Chi square values of microsatellite markers showing segregation distortion among F2 population of Ba...

Additional file 9: Table S6 of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

The genes with non-synonymous SNPs in the QTL for filled grain qFG1.1. (RM11968-RM14). (DOC 65 kb

Additional file 10: Table S7 of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

The genes with non-synonymous SNPs in the QTL for chalkiness qCHK4.1. (RM564-RM348) (DOC 168 kb

Additional file 5: Figure S3. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Phenotypic distributions of agronomic traits in F3 population derived from a cross between Basmati37...

Additional file 2: Table S1. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Transgressive segregants, heterosis, heterobeltiosis and inbreeding depression for 18 traits in the ...

Additional file 1: Figure S1. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

The grain appearance traits before and after cooking in the Basmati370, Jaya, F1 and selected F2 ind...

Additional file 13: of Genome sequencing of rice subspecies and genetic analysis of recombinant lines reveals regional yield- and quality-associated loci

Xiukun Li (4783458)
Lian Wu (166932)
Jiahong Wang (407742)
Jian Sun (27858)
Xiuhong Xia (4783461)
Xin Geng (571200)
Xuhong Wang (4783464)
Zhengjin Xu (4783467)
Quan Xu (554774)

September 2018

Table S6. The QTL analysis for 15 agronomic traits in the three areas. (XLSX 12Â kb

Additional file 4: of Genome-wide association study of agronomic traits in rice cultivated in temperate regions

Juan Reig-Valiente (3435071)
Luis Marqués (3435083)
Manuel Talón (52294)
Concha Domingo (3435080)

September 2018

Table S2. Mean phenotypic values of cultivars carrying different alleles in the significant associat...

Additional file 2: of QTL mapping and candidate gene analysis of peduncle vascular bundle related traits in rice by genome-wide association study

Laiyuan Zhai (4917016)
Tianqing Zheng (635384)
Xinyu Wang (341591)
Yun Wang (32846)
Kai Chen (129938)
Shu Wang (180520)
Jianlong Xu (841260)
Zhikang Li (416310)

March 2018

Table S1. List of the 423 accessions including country of origin, subpopulation (indica, temperate j...

Additional file7: of Genome sequencing of rice subspecies and genetic analysis of recombinant lines reveals regional yield- and quality-associated loci

Xiukun Li (4783458)
Lian Wu (166932)
Jiahong Wang (407742)
Jian Sun (27858)
Xiuhong Xia (4783461)
Xin Geng (571200)
Xuhong Wang (4783464)
Zhengjin Xu (4783467)
Quan Xu (554774)

September 2018

Table S5. The yield components and quality traits of japonica, intermediate type and indica-type pla...

Additional file 11:Table S8. of Genetic variation and association mapping for 12 agronomic traits in indica rice

Qing Lu (28914)
Mengchen Zhang (2802580)
Xiaojun Niu (3271788)
Shan Wang (120085)
Qun Xu (474143)
Yue Feng (158140)
Caihong Wang (535816)
Hongzhong Deng (3271791)
Xiaoping Yuan (535818)
Hanyong Yu (535819)
Yiping Wang (1484218)
Xinghua Wei (535820)

December 2015

Summary of 298 significant peak SNPs, including known genes (or QTLs) and new candidate genes. (XLSX...

Additional file 7: of QTL mapping and candidate gene analysis of peduncle vascular bundle related traits in rice by genome-wide association study

Laiyuan Zhai (4917016)
Tianqing Zheng (635384)
Xinyu Wang (341591)
Yun Wang (32846)
Kai Chen (129938)
Shu Wang (180520)
Jianlong Xu (841260)
Zhikang Li (416310)

March 2018

Figure S5. Comparisons of heading date, grain number per panicle and plant height among different ha...

Additional file 4: Figure S3. of Identification of bakanae disease resistance loci in japonica rice through genome wide association study

Andrea Volante (141325)
Alessandro Tondelli (3167490)
Maria Aragona (4098790)
Maria Valente (4098793)
Chiara Biselli (114669)
Francesca Desiderio (2588137)
Paolo Bagnaresi (84939)
Slavica Matic (4098787)
Maria Gullino (3579608)
Alessandro Infantino (4098784)
Davide Spadaro (1525594)
Giampiero ValĂ¨ (3486386)

June 2017

Details of the two QTL (on chromosomes Os1 and Os4) associated to bakanae disease resistance in the ...

Additional file 3: of Genome-wide association study of agronomic traits in rice cultivated in temperate regions

Juan Reig-Valiente (3435071)
Luis Marqués (3435083)
Manuel Talón (52294)
Concha Domingo (3435080)

September 2018

Table S3. Number of alleles carried by the 20 plants with the highest and the lowest value for each ...

Additional file 8: Table S5. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Quantitative trait loci (QTLs) detected in theÂ RIL population derived from Basmati370/Jaya. (DOC 38...

Additional file 3: Table S2. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Chi square values of microsatellite markers showing segregation distortion among F2 population of Ba...

Additional file 9: Table S6 of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

The genes with non-synonymous SNPs in the QTL for filled grain qFG1.1. (RM11968-RM14). (DOC 65 kb

Additional file 10: Table S7 of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

The genes with non-synonymous SNPs in the QTL for chalkiness qCHK4.1. (RM564-RM348) (DOC 168 kb

Additional file 5: Figure S3. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Phenotypic distributions of agronomic traits in F3 population derived from a cross between Basmati37...

Additional file 2: Table S1. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Transgressive segregants, heterosis, heterobeltiosis and inbreeding depression for 18 traits in the ...

Additional file 1: Figure S1. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

The grain appearance traits before and after cooking in the Basmati370, Jaya, F1 and selected F2 ind...

Additional file 13: of Genome sequencing of rice subspecies and genetic analysis of recombinant lines reveals regional yield- and quality-associated loci

Xiukun Li (4783458)
Lian Wu (166932)
Jiahong Wang (407742)
Jian Sun (27858)
Xiuhong Xia (4783461)
Xin Geng (571200)
Xuhong Wang (4783464)
Zhengjin Xu (4783467)
Quan Xu (554774)

September 2018

Table S6. The QTL analysis for 15 agronomic traits in the three areas. (XLSX 12Â kb

Additional file 4: of Genome-wide association study of agronomic traits in rice cultivated in temperate regions

Juan Reig-Valiente (3435071)
Luis Marqués (3435083)
Manuel Talón (52294)
Concha Domingo (3435080)

September 2018

Table S2. Mean phenotypic values of cultivars carrying different alleles in the significant associat...

Additional file 2: of QTL mapping and candidate gene analysis of peduncle vascular bundle related traits in rice by genome-wide association study

Laiyuan Zhai (4917016)
Tianqing Zheng (635384)
Xinyu Wang (341591)
Yun Wang (32846)
Kai Chen (129938)
Shu Wang (180520)
Jianlong Xu (841260)
Zhikang Li (416310)

March 2018

Table S1. List of the 423 accessions including country of origin, subpopulation (indica, temperate j...

Additional file7: of Genome sequencing of rice subspecies and genetic analysis of recombinant lines reveals regional yield- and quality-associated loci

Xiukun Li (4783458)
Lian Wu (166932)
Jiahong Wang (407742)
Jian Sun (27858)
Xiuhong Xia (4783461)
Xin Geng (571200)
Xuhong Wang (4783464)
Zhengjin Xu (4783467)
Quan Xu (554774)

September 2018

Table S5. The yield components and quality traits of japonica, intermediate type and indica-type pla...

Additional file 11:Table S8. of Genetic variation and association mapping for 12 agronomic traits in indica rice

Qing Lu (28914)
Mengchen Zhang (2802580)
Xiaojun Niu (3271788)
Shan Wang (120085)
Qun Xu (474143)
Yue Feng (158140)
Caihong Wang (535816)
Hongzhong Deng (3271791)
Xiaoping Yuan (535818)
Hanyong Yu (535819)
Yiping Wang (1484218)
Xinghua Wei (535820)

December 2015

Summary of 298 significant peak SNPs, including known genes (or QTLs) and new candidate genes. (XLSX...

Additional file 7: of QTL mapping and candidate gene analysis of peduncle vascular bundle related traits in rice by genome-wide association study

Laiyuan Zhai (4917016)
Tianqing Zheng (635384)
Xinyu Wang (341591)
Yun Wang (32846)
Kai Chen (129938)
Shu Wang (180520)
Jianlong Xu (841260)
Zhikang Li (416310)

March 2018

Figure S5. Comparisons of heading date, grain number per panicle and plant height among different ha...

Additional file 4: Figure S3. of Identification of bakanae disease resistance loci in japonica rice through genome wide association study

Andrea Volante (141325)
Alessandro Tondelli (3167490)
Maria Aragona (4098790)
Maria Valente (4098793)
Chiara Biselli (114669)
Francesca Desiderio (2588137)
Paolo Bagnaresi (84939)
Slavica Matic (4098787)
Maria Gullino (3579608)
Alessandro Infantino (4098784)
Davide Spadaro (1525594)
Giampiero ValĂ¨ (3486386)

June 2017

Details of the two QTL (on chromosomes Os1 and Os4) associated to bakanae disease resistance in the ...

Additional file 3: of Genome-wide association study of agronomic traits in rice cultivated in temperate regions

Juan Reig-Valiente (3435071)
Luis Marqués (3435083)
Manuel Talón (52294)
Concha Domingo (3435080)

September 2018

Table S3. Number of alleles carried by the 20 plants with the highest and the lowest value for each ...

Additional file 7: Table S4. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Abstract

Extracted data

Additional file 7: Table S4. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Abstract

Extracted data

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