Additional file 3: Table S2. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Additional file 6: Table S3. of Identification of putative markers linked to grain plumpness in rice (Oryza sativa L.) via association mapping

Erbao Liu (705639)
Siyuan Zeng (705640)
Xiangong Chen (4511041)
Xiaojing Dang (4511038)
Lijun Liang (423330)
Hui Wang (30400)
Zhiyao Dong (4511044)
Yang Liu (4829)
Delin Hong (705645)

October 2017

Marker-trait association loci with Pâ<â0.01 determined by the GLM and MLM analyses, their FDRs, ...

Additional file 3: Figure S1. of Genetic diversity trend in Indian rice varieties: an analysis using SSR markers

Nivedita Singh (499697)
Debjani Choudhury (3571781)
Gunjan Tiwari (3571778)
Amit Singh (130923)
Sundeep Kumar (499699)
Kalyani Srinivasan (499700)
R. Tyagi (3571784)
A. Sharma (5739)
N. Singh (3511094)
Rakesh Singh (499703)

September 2016

Detailed population structure of 729 rice varieties based on SSR data. (PDF 459Â kb

Additional file 1: of Pusa Basmati 1121 â a rice variety with exceptional kernel elongation and volume expansion after cooking

Vijaipal Singh (5073908)
Ashok Singh (1894972)
Trilochan Mohapatra (789073)
Gopala S (5073905)
Ranjith Ellur (4787154)

April 2018

Table S1 Area and production of total Basmati rice vis~a~vis PB 1121. Table S2 Panel test scores of ...

Additional file 7: Table S4. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Quantitative trait loci (QTLs) detected in F3 population of Basmati370/Jaya. (DOC 35 kb

Additional file 2: Table S1. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Transgressive segregants, heterosis, heterobeltiosis and inbreeding depression for 18 traits in the ...

Additional file 8: Table S5. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Quantitative trait loci (QTLs) detected in theÂ RIL population derived from Basmati370/Jaya. (DOC 38...

Additional file 5: Figure S3. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Phenotypic distributions of agronomic traits in F3 population derived from a cross between Basmati37...

Additional file 1: Figure S1. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

The grain appearance traits before and after cooking in the Basmati370, Jaya, F1 and selected F2 ind...

Additional file 10: Table S7 of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

The genes with non-synonymous SNPs in the QTL for chalkiness qCHK4.1. (RM564-RM348) (DOC 168 kb

Additional file 9: Table S6 of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

The genes with non-synonymous SNPs in the QTL for filled grain qFG1.1. (RM11968-RM14). (DOC 65 kb

Additional file 3: Table S1. of Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal

Anthony Travis (3447776)
Gareth Norton (1946413)
Sutapa Datta (379708)
Ramendra Sarma (3447764)
Tapash Dasgupta (1953040)
Filipe Savio (3447761)
Malcolm Macaulay (146819)
Peter Hedley (3447770)
Kenneth McNally (3447767)
Mahmud Sumon (3447773)
M. Islam (712392)
Adam Price (729908)

December 2015

Accessions of panel A with STRUCTURE group membership and PCA results. (XLSX 97Â kb

Additional file 3: Table S1. of Identification of bakanae disease resistance loci in japonica rice through genome wide association study

Andrea Volante (141325)
Alessandro Tondelli (3167490)
Maria Aragona (4098790)
Maria Valente (4098793)
Chiara Biselli (114669)
Francesca Desiderio (2588137)
Paolo Bagnaresi (84939)
Slavica Matic (4098787)
Maria Gullino (3579608)
Alessandro Infantino (4098784)
Davide Spadaro (1525594)
Giampiero ValĂ¨ (3486386)

June 2017

Genetic diversity (A), Genetic divergence (FST) (B) and marker density (C) estimates computed for th...

Additional file 3: of Exploring the genetic diversity within traditional Philippine pigmented Rice

Edwige Mbanjo (3848644)
Huw Jones (164391)
Xavier Caguiat (6652451)
Socorro Carandang (6652454)
John Ignacio (6652457)
Marilyn Ferrer (6652460)
Lesley Boyd (4641682)
Tobias Kretzschmar (732027)

April 2019

Table S9. Philippine pigmented rice accessions allocated to redefined geographical regions. Table S1...

Additional file 4: of Genome-wide association study of agronomic traits in rice cultivated in temperate regions

Juan Reig-Valiente (3435071)
Luis Marqués (3435083)
Manuel Talón (52294)
Concha Domingo (3435080)

September 2018

Table S2. Mean phenotypic values of cultivars carrying different alleles in the significant associat...

Additional file 3: of Genome-wide association study of agronomic traits in rice cultivated in temperate regions

Juan Reig-Valiente (3435071)
Luis Marqués (3435083)
Manuel Talón (52294)
Concha Domingo (3435080)

September 2018

Table S3. Number of alleles carried by the 20 plants with the highest and the lowest value for each ...

Additional file 6: Table S3. of Identification of putative markers linked to grain plumpness in rice (Oryza sativa L.) via association mapping

Erbao Liu (705639)
Siyuan Zeng (705640)
Xiangong Chen (4511041)
Xiaojing Dang (4511038)
Lijun Liang (423330)
Hui Wang (30400)
Zhiyao Dong (4511044)
Yang Liu (4829)
Delin Hong (705645)

October 2017

Marker-trait association loci with Pâ<â0.01 determined by the GLM and MLM analyses, their FDRs, ...

Additional file 3: Figure S1. of Genetic diversity trend in Indian rice varieties: an analysis using SSR markers

Nivedita Singh (499697)
Debjani Choudhury (3571781)
Gunjan Tiwari (3571778)
Amit Singh (130923)
Sundeep Kumar (499699)
Kalyani Srinivasan (499700)
R. Tyagi (3571784)
A. Sharma (5739)
N. Singh (3511094)
Rakesh Singh (499703)

September 2016

Detailed population structure of 729 rice varieties based on SSR data. (PDF 459Â kb

Additional file 1: of Pusa Basmati 1121 â a rice variety with exceptional kernel elongation and volume expansion after cooking

Vijaipal Singh (5073908)
Ashok Singh (1894972)
Trilochan Mohapatra (789073)
Gopala S (5073905)
Ranjith Ellur (4787154)

April 2018

Table S1 Area and production of total Basmati rice vis~a~vis PB 1121. Table S2 Panel test scores of ...

Additional file 7: Table S4. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Quantitative trait loci (QTLs) detected in F3 population of Basmati370/Jaya. (DOC 35 kb

Additional file 2: Table S1. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Transgressive segregants, heterosis, heterobeltiosis and inbreeding depression for 18 traits in the ...

Additional file 8: Table S5. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Quantitative trait loci (QTLs) detected in theÂ RIL population derived from Basmati370/Jaya. (DOC 38...

Additional file 5: Figure S3. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Phenotypic distributions of agronomic traits in F3 population derived from a cross between Basmati37...

Additional file 1: Figure S1. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

The grain appearance traits before and after cooking in the Basmati370, Jaya, F1 and selected F2 ind...

Additional file 10: Table S7 of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

The genes with non-synonymous SNPs in the QTL for chalkiness qCHK4.1. (RM564-RM348) (DOC 168 kb

Additional file 9: Table S6 of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

The genes with non-synonymous SNPs in the QTL for filled grain qFG1.1. (RM11968-RM14). (DOC 65 kb

Additional file 3: Table S1. of Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal

Anthony Travis (3447776)
Gareth Norton (1946413)
Sutapa Datta (379708)
Ramendra Sarma (3447764)
Tapash Dasgupta (1953040)
Filipe Savio (3447761)
Malcolm Macaulay (146819)
Peter Hedley (3447770)
Kenneth McNally (3447767)
Mahmud Sumon (3447773)
M. Islam (712392)
Adam Price (729908)

December 2015

Accessions of panel A with STRUCTURE group membership and PCA results. (XLSX 97Â kb

Additional file 3: Table S1. of Identification of bakanae disease resistance loci in japonica rice through genome wide association study

Andrea Volante (141325)
Alessandro Tondelli (3167490)
Maria Aragona (4098790)
Maria Valente (4098793)
Chiara Biselli (114669)
Francesca Desiderio (2588137)
Paolo Bagnaresi (84939)
Slavica Matic (4098787)
Maria Gullino (3579608)
Alessandro Infantino (4098784)
Davide Spadaro (1525594)
Giampiero ValĂ¨ (3486386)

June 2017

Genetic diversity (A), Genetic divergence (FST) (B) and marker density (C) estimates computed for th...

Additional file 3: of Exploring the genetic diversity within traditional Philippine pigmented Rice

Edwige Mbanjo (3848644)
Huw Jones (164391)
Xavier Caguiat (6652451)
Socorro Carandang (6652454)
John Ignacio (6652457)
Marilyn Ferrer (6652460)
Lesley Boyd (4641682)
Tobias Kretzschmar (732027)

April 2019

Table S9. Philippine pigmented rice accessions allocated to redefined geographical regions. Table S1...

Additional file 4: of Genome-wide association study of agronomic traits in rice cultivated in temperate regions

Juan Reig-Valiente (3435071)
Luis Marqués (3435083)
Manuel Talón (52294)
Concha Domingo (3435080)

September 2018

Table S2. Mean phenotypic values of cultivars carrying different alleles in the significant associat...

Additional file 3: of Genome-wide association study of agronomic traits in rice cultivated in temperate regions

Juan Reig-Valiente (3435071)
Luis Marqués (3435083)
Manuel Talón (52294)
Concha Domingo (3435080)

September 2018

Table S3. Number of alleles carried by the 20 plants with the highest and the lowest value for each ...

Additional file 6: Table S3. of Identification of putative markers linked to grain plumpness in rice (Oryza sativa L.) via association mapping

Erbao Liu (705639)
Siyuan Zeng (705640)
Xiangong Chen (4511041)
Xiaojing Dang (4511038)
Lijun Liang (423330)
Hui Wang (30400)
Zhiyao Dong (4511044)
Yang Liu (4829)
Delin Hong (705645)

October 2017

Marker-trait association loci with Pâ<â0.01 determined by the GLM and MLM analyses, their FDRs, ...

Additional file 3: Figure S1. of Genetic diversity trend in Indian rice varieties: an analysis using SSR markers

Nivedita Singh (499697)
Debjani Choudhury (3571781)
Gunjan Tiwari (3571778)
Amit Singh (130923)
Sundeep Kumar (499699)
Kalyani Srinivasan (499700)
R. Tyagi (3571784)
A. Sharma (5739)
N. Singh (3511094)
Rakesh Singh (499703)

September 2016

Detailed population structure of 729 rice varieties based on SSR data. (PDF 459Â kb

Additional file 1: of Pusa Basmati 1121 â a rice variety with exceptional kernel elongation and volume expansion after cooking

Vijaipal Singh (5073908)
Ashok Singh (1894972)
Trilochan Mohapatra (789073)
Gopala S (5073905)
Ranjith Ellur (4787154)

April 2018

Table S1 Area and production of total Basmati rice vis~a~vis PB 1121. Table S2 Panel test scores of ...

Additional file 3: Table S2. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Abstract

Extracted data

Additional file 3: Table S2. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Abstract

Extracted data

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