Additional file 10: Table S7 of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Additional file 10: of Genome sequencing of rice subspecies and genetic analysis of recombinant lines reveals regional yield- and quality-associated loci

Xiukun Li (4783458)
Lian Wu (166932)
Jiahong Wang (407742)
Jian Sun (27858)
Xiuhong Xia (4783461)
Xin Geng (571200)
Xuhong Wang (4783464)
Zhengjin Xu (4783467)
Quan Xu (554774)

September 2018

Figure S5. Candidate gene prediction of grain shape regulate locus on chromosome 12. (PDF 23Â kb

Additional file 2: of Fine mapping of qBK1, a major QTL for bakanae disease resistance in rice

Sais-Beul Lee (4753494)
Namgyu Kim (6700934)
Yeon-Jae Hur (4753497)
Su-Min Cho (6700943)
Tae-Heon Kim (2013925)
Ji-youn Lee (6700949)
Jun-Hyeon Cho (4753488)
Jong-Hee Lee (242907)
You-Chun Song (4753500)
Young-Su Seo (83496)
Jong-Min Ko (6700952)
Dong-Soo Park (1765399)

May 2019

Table S1. Twelve InDel markers designed by analyzing sequence differences between Nipponbare and 93â...

Additional file 13: of Genome sequencing of rice subspecies and genetic analysis of recombinant lines reveals regional yield- and quality-associated loci

Xiukun Li (4783458)
Lian Wu (166932)
Jiahong Wang (407742)
Jian Sun (27858)
Xiuhong Xia (4783461)
Xin Geng (571200)
Xuhong Wang (4783464)
Zhengjin Xu (4783467)
Quan Xu (554774)

September 2018

Table S6. The QTL analysis for 15 agronomic traits in the three areas. (XLSX 12Â kb

Additional file 9: Table S6 of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

The genes with non-synonymous SNPs in the QTL for filled grain qFG1.1. (RM11968-RM14). (DOC 65 kb

Additional file 8: Table S5. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Quantitative trait loci (QTLs) detected in theÂ RIL population derived from Basmati370/Jaya. (DOC 38...

Additional file 7: Table S4. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Quantitative trait loci (QTLs) detected in F3 population of Basmati370/Jaya. (DOC 35 kb

Additional file 2: Table S1. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Transgressive segregants, heterosis, heterobeltiosis and inbreeding depression for 18 traits in the ...

Additional file 3: Table S2. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Chi square values of microsatellite markers showing segregation distortion among F2 population of Ba...

Additional file 10: Table S7. of Identification of putative markers linked to grain plumpness in rice (Oryza sativa L.) via association mapping

Erbao Liu (705639)
Siyuan Zeng (705640)
Xiangong Chen (4511041)
Xiaojing Dang (4511038)
Lijun Liang (423330)
Hui Wang (30400)
Zhiyao Dong (4511044)
Yang Liu (4829)
Delin Hong (705645)

October 2017

Genotypes of 177 rice accessions with 261 SSR markers on 12 chromosomes. (XLSX 244Â kb

Additional file 1: Figure S1. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

The grain appearance traits before and after cooking in the Basmati370, Jaya, F1 and selected F2 ind...

Additional file 11:Table S8. of Genetic variation and association mapping for 12 agronomic traits in indica rice

Qing Lu (28914)
Mengchen Zhang (2802580)
Xiaojun Niu (3271788)
Shan Wang (120085)
Qun Xu (474143)
Yue Feng (158140)
Caihong Wang (535816)
Hongzhong Deng (3271791)
Xiaoping Yuan (535818)
Hanyong Yu (535819)
Yiping Wang (1484218)
Xinghua Wei (535820)

December 2015

Summary of 298 significant peak SNPs, including known genes (or QTLs) and new candidate genes. (XLSX...

Additional file 1: of High-resolution QTL mapping for grain appearance traits and co-localization of chalkiness-associated differentially expressed candidate genes in rice

Likai Chen (3428144)
Weiwei Gao (51947)
Siping Chen (296896)
Liping Wang (561851)
Jiyong Zou (3428141)
Yongzhu Liu (3339435)
Hui Wang (30400)
Zhiqiang Chen (218692)
Tao Guo (126667)

September 2016

Table S1. Comparison of eight traits between PYZX, P02428 and RILs in four environments in this stud...

Additional file 3: of High-resolution QTL mapping for grain appearance traits and co-localization of chalkiness-associated differentially expressed candidate genes in rice

Likai Chen (3428144)
Weiwei Gao (51947)
Siping Chen (296896)
Liping Wang (561851)
Jiyong Zou (3428141)
Yongzhu Liu (3339435)
Hui Wang (30400)
Zhiqiang Chen (218692)
Tao Guo (126667)

September 2016

Table S5. Annotated function of differentially expressed genes identified between RIL segregant pool...

Additional file 5: Figure S3. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Phenotypic distributions of agronomic traits in F3 population derived from a cross between Basmati37...

Additional file 10: Table S5. of Effect of qGN4.1 QTL for Grain Number per Panicle in Genetic Backgrounds of Twelve Different Mega Varieties of Rice

Vijay Singh (1439023)
Ranjith Ellur (4787154)
Ashok Singh (1894972)
M. Nagarajan (3032076)
Brahma Singh (4787157)
Nagendra Singh (359528)

January 2018

Analysis of all the affymetrix 50Â K SNP calls of 12 RPG along with qGN4.1 QTL-NILs on separate shee...

Additional file 10: of Genome sequencing of rice subspecies and genetic analysis of recombinant lines reveals regional yield- and quality-associated loci

Xiukun Li (4783458)
Lian Wu (166932)
Jiahong Wang (407742)
Jian Sun (27858)
Xiuhong Xia (4783461)
Xin Geng (571200)
Xuhong Wang (4783464)
Zhengjin Xu (4783467)
Quan Xu (554774)

September 2018

Figure S5. Candidate gene prediction of grain shape regulate locus on chromosome 12. (PDF 23Â kb

Additional file 2: of Fine mapping of qBK1, a major QTL for bakanae disease resistance in rice

Sais-Beul Lee (4753494)
Namgyu Kim (6700934)
Yeon-Jae Hur (4753497)
Su-Min Cho (6700943)
Tae-Heon Kim (2013925)
Ji-youn Lee (6700949)
Jun-Hyeon Cho (4753488)
Jong-Hee Lee (242907)
You-Chun Song (4753500)
Young-Su Seo (83496)
Jong-Min Ko (6700952)
Dong-Soo Park (1765399)

May 2019

Table S1. Twelve InDel markers designed by analyzing sequence differences between Nipponbare and 93â...

Additional file 13: of Genome sequencing of rice subspecies and genetic analysis of recombinant lines reveals regional yield- and quality-associated loci

Xiukun Li (4783458)
Lian Wu (166932)
Jiahong Wang (407742)
Jian Sun (27858)
Xiuhong Xia (4783461)
Xin Geng (571200)
Xuhong Wang (4783464)
Zhengjin Xu (4783467)
Quan Xu (554774)

September 2018

Table S6. The QTL analysis for 15 agronomic traits in the three areas. (XLSX 12Â kb

Additional file 9: Table S6 of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

The genes with non-synonymous SNPs in the QTL for filled grain qFG1.1. (RM11968-RM14). (DOC 65 kb

Additional file 8: Table S5. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Quantitative trait loci (QTLs) detected in theÂ RIL population derived from Basmati370/Jaya. (DOC 38...

Additional file 7: Table S4. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Quantitative trait loci (QTLs) detected in F3 population of Basmati370/Jaya. (DOC 35 kb

Additional file 2: Table S1. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Transgressive segregants, heterosis, heterobeltiosis and inbreeding depression for 18 traits in the ...

Additional file 3: Table S2. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Chi square values of microsatellite markers showing segregation distortion among F2 population of Ba...

Additional file 10: Table S7. of Identification of putative markers linked to grain plumpness in rice (Oryza sativa L.) via association mapping

Erbao Liu (705639)
Siyuan Zeng (705640)
Xiangong Chen (4511041)
Xiaojing Dang (4511038)
Lijun Liang (423330)
Hui Wang (30400)
Zhiyao Dong (4511044)
Yang Liu (4829)
Delin Hong (705645)

October 2017

Genotypes of 177 rice accessions with 261 SSR markers on 12 chromosomes. (XLSX 244Â kb

Additional file 1: Figure S1. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

The grain appearance traits before and after cooking in the Basmati370, Jaya, F1 and selected F2 ind...

Additional file 11:Table S8. of Genetic variation and association mapping for 12 agronomic traits in indica rice

Qing Lu (28914)
Mengchen Zhang (2802580)
Xiaojun Niu (3271788)
Shan Wang (120085)
Qun Xu (474143)
Yue Feng (158140)
Caihong Wang (535816)
Hongzhong Deng (3271791)
Xiaoping Yuan (535818)
Hanyong Yu (535819)
Yiping Wang (1484218)
Xinghua Wei (535820)

December 2015

Summary of 298 significant peak SNPs, including known genes (or QTLs) and new candidate genes. (XLSX...

Additional file 1: of High-resolution QTL mapping for grain appearance traits and co-localization of chalkiness-associated differentially expressed candidate genes in rice

Likai Chen (3428144)
Weiwei Gao (51947)
Siping Chen (296896)
Liping Wang (561851)
Jiyong Zou (3428141)
Yongzhu Liu (3339435)
Hui Wang (30400)
Zhiqiang Chen (218692)
Tao Guo (126667)

September 2016

Table S1. Comparison of eight traits between PYZX, P02428 and RILs in four environments in this stud...

Additional file 3: of High-resolution QTL mapping for grain appearance traits and co-localization of chalkiness-associated differentially expressed candidate genes in rice

Likai Chen (3428144)
Weiwei Gao (51947)
Siping Chen (296896)
Liping Wang (561851)
Jiyong Zou (3428141)
Yongzhu Liu (3339435)
Hui Wang (30400)
Zhiqiang Chen (218692)
Tao Guo (126667)

September 2016

Table S5. Annotated function of differentially expressed genes identified between RIL segregant pool...

Additional file 5: Figure S3. of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Lakshminarayana Vemireddy (3461612)
Sabahat Noor (3461618)
VV Satyavathi (3461630)
A Srividhya (3461609)
A Kaliappan (3461624)
SRN Parimala (3461639)
Prathibha Bharathi (3461627)
Dondapati Deborah (3461636)
KV Rao (3461621)
N Shobharani (3461633)
EA Siddiq (3461615)
Javaregowda Nagaraju (63235)

August 2015

Phenotypic distributions of agronomic traits in F3 population derived from a cross between Basmati37...

Additional file 10: Table S5. of Effect of qGN4.1 QTL for Grain Number per Panicle in Genetic Backgrounds of Twelve Different Mega Varieties of Rice

Vijay Singh (1439023)
Ranjith Ellur (4787154)
Ashok Singh (1894972)
M. Nagarajan (3032076)
Brahma Singh (4787157)
Nagendra Singh (359528)

January 2018

Analysis of all the affymetrix 50Â K SNP calls of 12 RPG along with qGN4.1 QTL-NILs on separate shee...

Additional file 10: of Genome sequencing of rice subspecies and genetic analysis of recombinant lines reveals regional yield- and quality-associated loci

Xiukun Li (4783458)
Lian Wu (166932)
Jiahong Wang (407742)
Jian Sun (27858)
Xiuhong Xia (4783461)
Xin Geng (571200)
Xuhong Wang (4783464)
Zhengjin Xu (4783467)
Quan Xu (554774)

September 2018

Figure S5. Candidate gene prediction of grain shape regulate locus on chromosome 12. (PDF 23Â kb

Additional file 2: of Fine mapping of qBK1, a major QTL for bakanae disease resistance in rice

Sais-Beul Lee (4753494)
Namgyu Kim (6700934)
Yeon-Jae Hur (4753497)
Su-Min Cho (6700943)
Tae-Heon Kim (2013925)
Ji-youn Lee (6700949)
Jun-Hyeon Cho (4753488)
Jong-Hee Lee (242907)
You-Chun Song (4753500)
Young-Su Seo (83496)
Jong-Min Ko (6700952)
Dong-Soo Park (1765399)

May 2019

Table S1. Twelve InDel markers designed by analyzing sequence differences between Nipponbare and 93â...

Additional file 13: of Genome sequencing of rice subspecies and genetic analysis of recombinant lines reveals regional yield- and quality-associated loci

Xiukun Li (4783458)
Lian Wu (166932)
Jiahong Wang (407742)
Jian Sun (27858)
Xiuhong Xia (4783461)
Xin Geng (571200)
Xuhong Wang (4783464)
Zhengjin Xu (4783467)
Quan Xu (554774)

September 2018

Table S6. The QTL analysis for 15 agronomic traits in the three areas. (XLSX 12Â kb

Additional file 10: Table S7 of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Abstract

Extracted data

Additional file 10: Table S7 of Discovery and mapping of genomic regions governing economically important traits of Basmati rice

Abstract

Extracted data

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