<p>(A) The proportion of sequences with latent fragments declines rapidly as the number of latent fragments per sequence increases. (B) The number of latent sites in recombinants decreases as more latent fragments are introduced. (C) As more latent fragments exist in a sequence, they have different origins in time. The grey envelopes indicate 95% of simulation results, white lines indicate the mean, and the black lines the median trends.</p
<p>(A) Mutation prevalences of six mutations in segment 4. (B) Prevalences of the ten associated clo...
<p>(a) Mutation rates, genome size and fitness of the last common ancestors for the different mutati...
<p>(A) The frequencies of proviral genomes in different Hamming classes at various times (generation...
<p>We ran 1000 simulations with the intermediate fitness landscape shown in the insert, and categori...
<p>The boxplots show the distributions of the mean proportion of lineages through time (averaged fro...
<p>The number of non-synonymous (top), synonymous (middle) and non-coding (bottom) mutations were pl...
<p>A) Simulations without recombination. B) Simulations with recombination. Grey lines show the prop...
<p>The Y-axis shows the number of sequenced gene fragments (reads) isolated in EV before (black) and...
Segmental duplications (SDs) are long DNA sequences that are repeated in a genome and have high sequ...
<p>After approximately 2 years post-PHI, diversity grows linearly in the latent reservoir (blue soli...
The frequency of ancestry that is introgression-derived is shown for non-overlapping 100 kb windows ...
<p>(A) profile along a 11.4 Mb long fragment of human chromosome 10 that contains 6 skew N-domains ...
<p>The percentage of reads for the top twenty 3-mers at the 5′ breakpoint across all samples. Four h...
<p>(A) Evolution tree arising from five mutations on segment 6. (B) Prevalences of the clones across...
<p><b>A</b>. Comparison of hotspot distribution in a virtual chromosome with motif distribution in t...
<p>(A) Mutation prevalences of six mutations in segment 4. (B) Prevalences of the ten associated clo...
<p>(a) Mutation rates, genome size and fitness of the last common ancestors for the different mutati...
<p>(A) The frequencies of proviral genomes in different Hamming classes at various times (generation...
<p>We ran 1000 simulations with the intermediate fitness landscape shown in the insert, and categori...
<p>The boxplots show the distributions of the mean proportion of lineages through time (averaged fro...
<p>The number of non-synonymous (top), synonymous (middle) and non-coding (bottom) mutations were pl...
<p>A) Simulations without recombination. B) Simulations with recombination. Grey lines show the prop...
<p>The Y-axis shows the number of sequenced gene fragments (reads) isolated in EV before (black) and...
Segmental duplications (SDs) are long DNA sequences that are repeated in a genome and have high sequ...
<p>After approximately 2 years post-PHI, diversity grows linearly in the latent reservoir (blue soli...
The frequency of ancestry that is introgression-derived is shown for non-overlapping 100 kb windows ...
<p>(A) profile along a 11.4 Mb long fragment of human chromosome 10 that contains 6 skew N-domains ...
<p>The percentage of reads for the top twenty 3-mers at the 5′ breakpoint across all samples. Four h...
<p>(A) Evolution tree arising from five mutations on segment 6. (B) Prevalences of the clones across...
<p><b>A</b>. Comparison of hotspot distribution in a virtual chromosome with motif distribution in t...
<p>(A) Mutation prevalences of six mutations in segment 4. (B) Prevalences of the ten associated clo...
<p>(a) Mutation rates, genome size and fitness of the last common ancestors for the different mutati...
<p>(A) The frequencies of proviral genomes in different Hamming classes at various times (generation...