<p>The percentage of reads for the top twenty 3-mers at the 5′ breakpoint across all samples. Four high frequency motifs (shown in color) were grouped into one class and used in the stratification of reads. This grouping presented the divergent GC profiles shown in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0086993#pone-0086993-g007" target="_blank">Figure 7</a>.</p
GC content bias describes the dependence between fragment count (read coverage) and GC content found...
<p>In <b>A</b>, we plotted the observed levels of sequence diversity in 100 kb windows throughout th...
<p>Here, a selection of chromosome arms is offered. The motifs are labeled at the top of the figure....
<p>(A) Sequence logo of the degenerate 11-mer motif over-represented in the close vicinity (±15 bp) ...
<p>The gray brackets indicate the start and end of molecules (strand breaks). Frequencies are displa...
Genomic structural variants are large events that change the structure of the genome. These can caus...
<p>At the top are plotted the R<sup>2</sup>s and the slopes of the correlations between codon occurr...
<p>The y-axis denotes the proportion of each nucleotide at fixed positions relative to the fragment ...
<p>A) GC-rich motif (CGSCNGSCGKYGCCGSCGSYG) identified that is commonly found in regions of ultra-lo...
<p>Preferential binding of DBDs toward groups IIa and IIc or groups IIa and IId are highlighted by o...
GC content bias describes the dependence between fragment count (read coverage) and GC content found...
Sequence variability analyses of the three DNA fragments analysed, considering the complete dataset ...
<p>From top to bottom: the slopes of the occurrence-preference correlation between trinucleotide-mot...
<p>(A) DNA inversion results in read pairs with same relative orientation and increased inner-mate d...
<p>Values for genera (top) and families (bottom) were obtained by neighbor-joining analyses based on...
GC content bias describes the dependence between fragment count (read coverage) and GC content found...
<p>In <b>A</b>, we plotted the observed levels of sequence diversity in 100 kb windows throughout th...
<p>Here, a selection of chromosome arms is offered. The motifs are labeled at the top of the figure....
<p>(A) Sequence logo of the degenerate 11-mer motif over-represented in the close vicinity (±15 bp) ...
<p>The gray brackets indicate the start and end of molecules (strand breaks). Frequencies are displa...
Genomic structural variants are large events that change the structure of the genome. These can caus...
<p>At the top are plotted the R<sup>2</sup>s and the slopes of the correlations between codon occurr...
<p>The y-axis denotes the proportion of each nucleotide at fixed positions relative to the fragment ...
<p>A) GC-rich motif (CGSCNGSCGKYGCCGSCGSYG) identified that is commonly found in regions of ultra-lo...
<p>Preferential binding of DBDs toward groups IIa and IIc or groups IIa and IId are highlighted by o...
GC content bias describes the dependence between fragment count (read coverage) and GC content found...
Sequence variability analyses of the three DNA fragments analysed, considering the complete dataset ...
<p>From top to bottom: the slopes of the occurrence-preference correlation between trinucleotide-mot...
<p>(A) DNA inversion results in read pairs with same relative orientation and increased inner-mate d...
<p>Values for genera (top) and families (bottom) were obtained by neighbor-joining analyses based on...
GC content bias describes the dependence between fragment count (read coverage) and GC content found...
<p>In <b>A</b>, we plotted the observed levels of sequence diversity in 100 kb windows throughout th...
<p>Here, a selection of chromosome arms is offered. The motifs are labeled at the top of the figure....