Prevalent motifs in ChIP-seq intervals precipitated with c-Fos antibodies.

<p>(<b>a</b>): Logo plot representing the AP-1 PWM from the TRANSFAC database. (<b>b</b>) Logo plot for the NF-Y PWM from TRANSFAC. (<b>c</b>) Summary of the top-ranking motifs obtained with MEME for proximal and distal sequence sets from the four cell lines under study. The rank of the two PWMs shown in (<b>a</b>) and (<b>b</b>) sorted by the AUC values for all 2176 TRANSFAC-related PWMs are given as superscript indices in this Table (see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0160803#sec017" target="_blank">Methods</a> for details).