<p>Proportion of AP-1 motif occurrence in proximal and distal genomic ChIP-seq intervals bound by c-Fos, but not by NF-YB are shown. Proximal (p) and distal (d) genomic intervals targeted by c-Fos, but not by NF-YB (column c-Fos of <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0160803#pone.0160803.t001" target="_blank">Table 1</a>) differ significantly in the occurrence of AP-1 motifs detected by an AP-1 PWM (<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0160803#pone.0160803.g001" target="_blank">Fig 1</a>); AP-1+: number of intervals with, AP-1−: without a detectable AP-1 motif. In the last column the Fisher’s Exact Odds Ratios (OR, bold) and the corresponding P-values (in parentheses) are gi...
<p>FMotif was tested with four widely used human ChIP-seq data sets for four DNA-binding TFs includi...
<p>Percentage of FXR binding sites in the two datasets that were distributed to >10 kb from genes (i...
<p>All TF ChIP-seq experiments from the Myers-lab released as part of the ENCODE project were downlo...
<p>In contrast to the proximal genomic intervals no enrichment of CCAAT box motifs was found in the ...
<p>Genomic proximal (p) and distal (d) intervals precipitated with anti-c-fos and and-NF-YB antibodi...
<p>The percentage of genomic intervals that harbor an AP-1 motif was calculated and plotted against ...
<p>Shown are the numbers of ChIP-seq genomic intervals found in three cell lines (HeLa S3, K562, GM1...
<p>Two instances of a NF-Y related CCAAT motif are observed in the three different cell lines. Addit...
<p>The total numbers of ChIP-seq intervals that are bound either by c-Fos, NF-YB, or by both of them...
<p>(<b>a</b>): Logo plot representing the AP-1 PWM from the TRANSFAC database. (<b>b</b>) Logo plot ...
<p>We used cell type specific chromatin state data (Broad ChromHMM) [<a href="http://www.plosone.org...
<div><p>ChIP-seq experiments detect the chromatin occupancy of known transcription factors in a geno...
Background: The global effort to annotate the non-coding portion of the human genom...
<p>(A) 4,428 SNPs identified by resequencing at as many sites. Y-axis indicates the number of SNPs i...
<p><b>(A, B)</b> Number (A) and genomic features (B) of high confidence (HC) p53 ChIP-seq peaks from...
<p>FMotif was tested with four widely used human ChIP-seq data sets for four DNA-binding TFs includi...
<p>Percentage of FXR binding sites in the two datasets that were distributed to >10 kb from genes (i...
<p>All TF ChIP-seq experiments from the Myers-lab released as part of the ENCODE project were downlo...
<p>In contrast to the proximal genomic intervals no enrichment of CCAAT box motifs was found in the ...
<p>Genomic proximal (p) and distal (d) intervals precipitated with anti-c-fos and and-NF-YB antibodi...
<p>The percentage of genomic intervals that harbor an AP-1 motif was calculated and plotted against ...
<p>Shown are the numbers of ChIP-seq genomic intervals found in three cell lines (HeLa S3, K562, GM1...
<p>Two instances of a NF-Y related CCAAT motif are observed in the three different cell lines. Addit...
<p>The total numbers of ChIP-seq intervals that are bound either by c-Fos, NF-YB, or by both of them...
<p>(<b>a</b>): Logo plot representing the AP-1 PWM from the TRANSFAC database. (<b>b</b>) Logo plot ...
<p>We used cell type specific chromatin state data (Broad ChromHMM) [<a href="http://www.plosone.org...
<div><p>ChIP-seq experiments detect the chromatin occupancy of known transcription factors in a geno...
Background: The global effort to annotate the non-coding portion of the human genom...
<p>(A) 4,428 SNPs identified by resequencing at as many sites. Y-axis indicates the number of SNPs i...
<p><b>(A, B)</b> Number (A) and genomic features (B) of high confidence (HC) p53 ChIP-seq peaks from...
<p>FMotif was tested with four widely used human ChIP-seq data sets for four DNA-binding TFs includi...
<p>Percentage of FXR binding sites in the two datasets that were distributed to >10 kb from genes (i...
<p>All TF ChIP-seq experiments from the Myers-lab released as part of the ENCODE project were downlo...