ChIP-seq peaks for three TFs [34,40,33] were used to intersect MF motifs. The motif families were ranked according to the percent per family that intersected peaks for each TF. The top five MOA-seq Motif families are and the families shown (yellow highlight) and sequences associated with the binding sites (red) are indicated. (EPS)</p
Motivation: Advances in high-throughput sequencing have resulted in rapid growth in large, high-qual...
Coupling chromatin immunoprecipitation (ChIP) with recently developed massively parallel sequencing ...
<p>(<b>a</b>): Logo plot representing the AP-1 PWM from the TRANSFAC database. (<b>b</b>) Logo plot ...
<p>All TF ChIP-seq experiments from the Myers-lab released as part of the ENCODE project were downlo...
(A-F) ChIP-seq binding peaks of (A-B) FEA4 or (E-F) TB1, ATAC-Seq coverage (Ac) and peaks (Ap), MOA-...
Background: Chromatin immunoprecipitation (ChIP) coupled to high-throughput...
ChIP-seq, which combines chromatin immunoprecipitation (ChIP) with next-generation parallel sequenci...
<p><b>A. </b><i>De novo</i> motif discovery on three TFs on four cell lines using the ChIPMotifs ide...
<p><b>A.</b> Overlapping sites for (primary motif, secondary motif) pairs where modeling competitive...
<p>(A) Genome distribution of So-enriched regions (peaks) with respect to annotated transcription st...
Motivation: DNA binding proteins play crucial roles in the regulation of gene expression. Transcript...
Motivation: Transcription factor (TF) ChIP-seq datasets have particular characteristics that provide...
<p>(A) Sequence motifs enriched at Sp1/Sp3 and Sp2 binding sites. Logos were obtained by running MEM...
<p><b>A.</b> Two ranking databases were made using 9713 motifs and 1118 ChIP-Seq tracks. The ChIP-Se...
International audienceDramatic progress in the development of next-generation sequencing technologie...
Motivation: Advances in high-throughput sequencing have resulted in rapid growth in large, high-qual...
Coupling chromatin immunoprecipitation (ChIP) with recently developed massively parallel sequencing ...
<p>(<b>a</b>): Logo plot representing the AP-1 PWM from the TRANSFAC database. (<b>b</b>) Logo plot ...
<p>All TF ChIP-seq experiments from the Myers-lab released as part of the ENCODE project were downlo...
(A-F) ChIP-seq binding peaks of (A-B) FEA4 or (E-F) TB1, ATAC-Seq coverage (Ac) and peaks (Ap), MOA-...
Background: Chromatin immunoprecipitation (ChIP) coupled to high-throughput...
ChIP-seq, which combines chromatin immunoprecipitation (ChIP) with next-generation parallel sequenci...
<p><b>A. </b><i>De novo</i> motif discovery on three TFs on four cell lines using the ChIPMotifs ide...
<p><b>A.</b> Overlapping sites for (primary motif, secondary motif) pairs where modeling competitive...
<p>(A) Genome distribution of So-enriched regions (peaks) with respect to annotated transcription st...
Motivation: DNA binding proteins play crucial roles in the regulation of gene expression. Transcript...
Motivation: Transcription factor (TF) ChIP-seq datasets have particular characteristics that provide...
<p>(A) Sequence motifs enriched at Sp1/Sp3 and Sp2 binding sites. Logos were obtained by running MEM...
<p><b>A.</b> Two ranking databases were made using 9713 motifs and 1118 ChIP-Seq tracks. The ChIP-Se...
International audienceDramatic progress in the development of next-generation sequencing technologie...
Motivation: Advances in high-throughput sequencing have resulted in rapid growth in large, high-qual...
Coupling chromatin immunoprecipitation (ChIP) with recently developed massively parallel sequencing ...
<p>(<b>a</b>): Logo plot representing the AP-1 PWM from the TRANSFAC database. (<b>b</b>) Logo plot ...