<p>The three known PRE motifs from TRANSFAC are shown in upper panels A (PR_01), B (PR_02), and C (PR_Q2). The consensus logo motifs derived using MEME analysis of ChIP-seq data from the 1,035 PR-binding sites common to both T47D breast cancer cells and leiomyoma cells are shown in lower panels of A, B, and C. Panel D shows the proposed consensus PRE motif based on the three TRANSFAC motifs and the discovered motifs from ChIP-seq data. For the consensus logos, the vertical axes (Bits) indicate the information content of the base frequency at that position. The horizontal axes refer to consensus site position.</p
Protein sequences of ripening-associated DzERFs were used to identify conserved motifs. Ten conserve...
<p><b>A.</b> Overlapping sites for (primary motif, secondary motif) pairs where modeling competitive...
<p>Nucleotide conservation of the five (A-E) highly abundant <i>cis</i>-regulatory motifs is display...
<p>(<b>a</b>): Logo plot representing the AP-1 PWM from the TRANSFAC database. (<b>b</b>) Logo plot ...
<p>The top represents the sequence logos reflecting the prevalence of each symbol by height. Beneath...
<p><b>A)</b> Relative enrichment levels of JA-ESR1 and TR-LRF_Q2 in all breast cancer samples. <b>B)...
*<p>A consensus sequence of a motif set is a pseudo sequence that has a minimal average distance to ...
<p>(A) Sequence motifs enriched at Sp1/Sp3 and Sp2 binding sites. Logos were obtained by running MEM...
<p>Analysis was done with the MEME suite <a href="http://www.plosone.org/article/info:doi/10.1371/jo...
<p>MEME motifs are represented by position-specific probability matrices that specify the probabilit...
<p>Logos of conserved consensus sequences were identified from 4058 aligned FGly-sulfatases. The log...
<p>Top 10 enriched TF binding motifs within PR-binding sites common to both T47D breast cancer cells...
<p>(A) SLC22 family-conserved motifs versus subclade-conserved motifs. Overlaid on the 2D topology a...
This protocol describes a suite of tools for motif finding, using cis-regulatory motifs as an exampl...
<p>Signature motifs recognized by each monoclonal antibody are shown in the second column: the numbe...
Protein sequences of ripening-associated DzERFs were used to identify conserved motifs. Ten conserve...
<p><b>A.</b> Overlapping sites for (primary motif, secondary motif) pairs where modeling competitive...
<p>Nucleotide conservation of the five (A-E) highly abundant <i>cis</i>-regulatory motifs is display...
<p>(<b>a</b>): Logo plot representing the AP-1 PWM from the TRANSFAC database. (<b>b</b>) Logo plot ...
<p>The top represents the sequence logos reflecting the prevalence of each symbol by height. Beneath...
<p><b>A)</b> Relative enrichment levels of JA-ESR1 and TR-LRF_Q2 in all breast cancer samples. <b>B)...
*<p>A consensus sequence of a motif set is a pseudo sequence that has a minimal average distance to ...
<p>(A) Sequence motifs enriched at Sp1/Sp3 and Sp2 binding sites. Logos were obtained by running MEM...
<p>Analysis was done with the MEME suite <a href="http://www.plosone.org/article/info:doi/10.1371/jo...
<p>MEME motifs are represented by position-specific probability matrices that specify the probabilit...
<p>Logos of conserved consensus sequences were identified from 4058 aligned FGly-sulfatases. The log...
<p>Top 10 enriched TF binding motifs within PR-binding sites common to both T47D breast cancer cells...
<p>(A) SLC22 family-conserved motifs versus subclade-conserved motifs. Overlaid on the 2D topology a...
This protocol describes a suite of tools for motif finding, using cis-regulatory motifs as an exampl...
<p>Signature motifs recognized by each monoclonal antibody are shown in the second column: the numbe...
Protein sequences of ripening-associated DzERFs were used to identify conserved motifs. Ten conserve...
<p><b>A.</b> Overlapping sites for (primary motif, secondary motif) pairs where modeling competitive...
<p>Nucleotide conservation of the five (A-E) highly abundant <i>cis</i>-regulatory motifs is display...