Additional file 3: of Evolution and expression of the fructokinase gene family in Saccharum

Additional file 2: of Analysis of the diversity and tissue specificity of sucrose synthase genes in the long read transcriptome of sugarcane

Prathima Thirugnanasambandam (4041584)
Patrick Mason (4041587)
Nam Hoang (4041575)
Agnelo Furtado (1823)
Frederik Botha (4041572)
Robert Henry (108785)

April 2019

Figure S1. Identification and sequence retrieval of SuSy transcripts from the SUGIT transcriptome re...

Additional file 3: of The Solanum chacoense Fertilization-Related Kinase 3 (ScFRK3) is involved in male and female gametophyte development

Caroline Daigle (3481145)
Benjamin Mazin (6708722)
Daniel Matton (3481148)

May 2019

Figure S2. Phylogenetic tree showing the relations between the AtMPKs, SlMPKs and the ScMPKs found i...

Additional file 3: Table S7. of Association of variation in the sugarcane transcriptome with sugar content

Prathima Thirugnanasambandam (4041584)
Nam Hoang (4041575)
Agnelo Furtado (1823)
Frederick Botha (4616092)
Robert Henry (108785)

November 2017

List of DEGs in the SUGIT, HST VS HSB. Table S8 List of DEGs in the SUGIT, LST VS LSB. Table S9 List...

Additional file 7: of Evolution and expression of the fructokinase gene family in Saccharum

Yihong Chen (2013736)
Qing Zhang (1802)
Weichang Hu (3503660)
Xingtan Zhang (694798)
Liming Wang (114648)
Xiuting Hua (3771160)
Qingyi Yu (734375)
Ray Ming (591215)
Jisen Zhang (3445649)

February 2017

Heatmap of the expression levels of SsFRK gene family members under Et treatment. SR: S. robustum Mo...

Additional file 9: of Evolution and expression of the fructokinase gene family in Saccharum

Yihong Chen (2013736)
Qing Zhang (1802)
Weichang Hu (3503660)
Xingtan Zhang (694798)
Liming Wang (114648)
Xiuting Hua (3771160)
Qingyi Yu (734375)
Ray Ming (591215)
Jisen Zhang (3445649)

February 2017

The primers for qRT-PCR verification of five SsFRK in four Saccharum species. (DOC 29 kb

Additional file 5: of New insights into the evolution and functional divergence of the SWEET family in Saccharum based on comparative genomics

Weichang Hu (3503660)
Xiuting Hua (3771160)
Qing Zhang (1802)
Jianping Wang (215292)
Qiaochu Shen (5944217)
Xingtan Zhang (694798)
Kai Wang (21246)
Qingyi Yu (734375)
Yann-Rong Lin (3169416)
Ray Ming (591215)
Jisen Zhang (3445649)

November 2018

A RT-qPCR verification of SWEET2b and SWEET4b in partial tissues of two Saccharum species. Note: IN,...

Additional file 4: of New insights into the evolution and functional divergence of the SWEET family in Saccharum based on comparative genomics

Weichang Hu (3503660)
Xiuting Hua (3771160)
Qing Zhang (1802)
Jianping Wang (215292)
Qiaochu Shen (5944217)
Xingtan Zhang (694798)
Kai Wang (21246)
Qingyi Yu (734375)
Yann-Rong Lin (3169416)
Ray Ming (591215)
Jisen Zhang (3445649)

November 2018

An unrooted tree using SWEET amino acid sequences from sugarcane, sorghum, maize and rice SWEET gene...

Additional file 8: Table S4. of Comparative structural analysis of Bru1 region homeologs in Saccharum spontaneum and S. officinarum

Jisen Zhang (3445649)
Anupma Sharma (257041)
Qingyi Yu (734375)
Jianping Wang (215292)
Leiting Li (3445646)
Lin Zhu (192179)
Xingtan Zhang (694798)
Youqiang Chen (1544623)
Ray Ming (591215)

June 2016

The average Ka/Ks ratio of the gene pairs within and between LA Purple (S. officinarum), AP85-441 (S...

Additional file 1: of Analysis of the diversity and tissue specificity of sucrose synthase genes in the long read transcriptome of sugarcane

Prathima Thirugnanasambandam (4041584)
Patrick Mason (4041587)
Nam Hoang (4041575)
Agnelo Furtado (1823)
Frederik Botha (4041572)
Robert Henry (108785)

April 2019

Table S1. Details of RNA-Seq reads from various tissues used for the SuSy expression study. Table S2...

Additional file 8: of New insights into the evolution and functional divergence of the SWEET family in Saccharum based on comparative genomics

Weichang Hu (3503660)
Xiuting Hua (3771160)
Qing Zhang (1802)
Jianping Wang (215292)
Qiaochu Shen (5944217)
Xingtan Zhang (694798)
Kai Wang (21246)
Qingyi Yu (734375)
Yann-Rong Lin (3169416)
Ray Ming (591215)
Jisen Zhang (3445649)

November 2018

The primers for PCR verification of SWEET4e and SWEET16b in two Saccharum species. (DOCX 17 kb

Additional file 3: of New insights into the evolution and functional divergence of the SWEET family in Saccharum based on comparative genomics

Weichang Hu (3503660)
Xiuting Hua (3771160)
Qing Zhang (1802)
Jianping Wang (215292)
Qiaochu Shen (5944217)
Xingtan Zhang (694798)
Kai Wang (21246)
Qingyi Yu (734375)
Yann-Rong Lin (3169416)
Ray Ming (591215)
Jisen Zhang (3445649)

November 2018

A schematic diagram for the relationship of the four clades of the phylogenetic tree constructed by ...

Additional file 6: of Physiological and transcriptional analyses of developmental stages along sugarcane leaf

Lucia Mattiello (345378)
Diego Riaño-Pachón (3430481)
Marina Martins (3430472)
Larissa da Cruz (3430469)
Denis Bassi (3430457)
Paulo Marchiori (3430463)
Rafael Ribeiro (3430466)
Mônica Labate (3430484)
Carlos Labate (3430451)
Marcelo Menossi (25694)

December 2015

Table with the list of orthologous genes between the five species: Sorghum bicolor (Abbreviation: SB...

Additional file 11 of Genome-wide analysis of R2R3-MYB transcription factors family in the autopolyploid Saccharum spontaneum: an exploration of dominance expression and stress response

Yuan Yuan (25702)
Xiping Yang (647673)
Mengfan Feng (11287220)
Hongyan Ding (3582344)
Muhammad Tahir Khan (8691594)
Jisen Zhang (3445649)
Muqing Zhang (481513)

August 2021

Additional file 11: Figure S2. Comparison of phylogeny and gene structure of R2R3-MYB gene between S...

Additional file 9: Table S5. of Comparative structural analysis of Bru1 region homeologs in Saccharum spontaneum and S. officinarum

Jisen Zhang (3445649)
Anupma Sharma (257041)
Qingyi Yu (734375)
Jianping Wang (215292)
Leiting Li (3445646)
Lin Zhu (192179)
Xingtan Zhang (694798)
Youqiang Chen (1544623)
Ray Ming (591215)

June 2016

Estimated insertion time of full length retrotransposons in Bru1 locus of LA Purple (S. officinarum)...

Additional file 1: Figure S1. of Comparative genomics of Fructobacillus spp. and Leuconostoc spp. reveals niche-specific evolution of Fructobacillus spp.

Akihito Endo (330538)
Yasuhiro Tanizawa (1499266)
Naoto Tanaka (20817)
Shintaro Maeno (3454589)
Himanshu Kumar (778096)
Yuh Shiwa (512008)
Sanae Okada (3454592)
Hirofumi Yoshikawa (231503)
Leon Dicks (3454595)
Junichi Nakagawa (1866295)
Masanori Arita (80282)

December 2015

Comparison of gene content profiles obtained for the genera Fructobacillus and Leuconostoc. The Mann...

Additional file 2: of Analysis of the diversity and tissue specificity of sucrose synthase genes in the long read transcriptome of sugarcane

Prathima Thirugnanasambandam (4041584)
Patrick Mason (4041587)
Nam Hoang (4041575)
Agnelo Furtado (1823)
Frederik Botha (4041572)
Robert Henry (108785)

April 2019

Figure S1. Identification and sequence retrieval of SuSy transcripts from the SUGIT transcriptome re...

Additional file 3: of The Solanum chacoense Fertilization-Related Kinase 3 (ScFRK3) is involved in male and female gametophyte development

Caroline Daigle (3481145)
Benjamin Mazin (6708722)
Daniel Matton (3481148)

May 2019

Figure S2. Phylogenetic tree showing the relations between the AtMPKs, SlMPKs and the ScMPKs found i...

Additional file 3: Table S7. of Association of variation in the sugarcane transcriptome with sugar content

Prathima Thirugnanasambandam (4041584)
Nam Hoang (4041575)
Agnelo Furtado (1823)
Frederick Botha (4616092)
Robert Henry (108785)

November 2017

List of DEGs in the SUGIT, HST VS HSB. Table S8 List of DEGs in the SUGIT, LST VS LSB. Table S9 List...

Additional file 7: of Evolution and expression of the fructokinase gene family in Saccharum

Yihong Chen (2013736)
Qing Zhang (1802)
Weichang Hu (3503660)
Xingtan Zhang (694798)
Liming Wang (114648)
Xiuting Hua (3771160)
Qingyi Yu (734375)
Ray Ming (591215)
Jisen Zhang (3445649)

February 2017

Heatmap of the expression levels of SsFRK gene family members under Et treatment. SR: S. robustum Mo...

Additional file 9: of Evolution and expression of the fructokinase gene family in Saccharum

Yihong Chen (2013736)
Qing Zhang (1802)
Weichang Hu (3503660)
Xingtan Zhang (694798)
Liming Wang (114648)
Xiuting Hua (3771160)
Qingyi Yu (734375)
Ray Ming (591215)
Jisen Zhang (3445649)

February 2017

The primers for qRT-PCR verification of five SsFRK in four Saccharum species. (DOC 29 kb

Additional file 5: of New insights into the evolution and functional divergence of the SWEET family in Saccharum based on comparative genomics

Weichang Hu (3503660)
Xiuting Hua (3771160)
Qing Zhang (1802)
Jianping Wang (215292)
Qiaochu Shen (5944217)
Xingtan Zhang (694798)
Kai Wang (21246)
Qingyi Yu (734375)
Yann-Rong Lin (3169416)
Ray Ming (591215)
Jisen Zhang (3445649)

November 2018

A RT-qPCR verification of SWEET2b and SWEET4b in partial tissues of two Saccharum species. Note: IN,...

Additional file 4: of New insights into the evolution and functional divergence of the SWEET family in Saccharum based on comparative genomics

Weichang Hu (3503660)
Xiuting Hua (3771160)
Qing Zhang (1802)
Jianping Wang (215292)
Qiaochu Shen (5944217)
Xingtan Zhang (694798)
Kai Wang (21246)
Qingyi Yu (734375)
Yann-Rong Lin (3169416)
Ray Ming (591215)
Jisen Zhang (3445649)

November 2018

An unrooted tree using SWEET amino acid sequences from sugarcane, sorghum, maize and rice SWEET gene...

Additional file 8: Table S4. of Comparative structural analysis of Bru1 region homeologs in Saccharum spontaneum and S. officinarum

Jisen Zhang (3445649)
Anupma Sharma (257041)
Qingyi Yu (734375)
Jianping Wang (215292)
Leiting Li (3445646)
Lin Zhu (192179)
Xingtan Zhang (694798)
Youqiang Chen (1544623)
Ray Ming (591215)

June 2016

The average Ka/Ks ratio of the gene pairs within and between LA Purple (S. officinarum), AP85-441 (S...

Additional file 1: of Analysis of the diversity and tissue specificity of sucrose synthase genes in the long read transcriptome of sugarcane

Prathima Thirugnanasambandam (4041584)
Patrick Mason (4041587)
Nam Hoang (4041575)
Agnelo Furtado (1823)
Frederik Botha (4041572)
Robert Henry (108785)

April 2019

Table S1. Details of RNA-Seq reads from various tissues used for the SuSy expression study. Table S2...

Additional file 8: of New insights into the evolution and functional divergence of the SWEET family in Saccharum based on comparative genomics

Weichang Hu (3503660)
Xiuting Hua (3771160)
Qing Zhang (1802)
Jianping Wang (215292)
Qiaochu Shen (5944217)
Xingtan Zhang (694798)
Kai Wang (21246)
Qingyi Yu (734375)
Yann-Rong Lin (3169416)
Ray Ming (591215)
Jisen Zhang (3445649)

November 2018

The primers for PCR verification of SWEET4e and SWEET16b in two Saccharum species. (DOCX 17 kb

Additional file 3: of New insights into the evolution and functional divergence of the SWEET family in Saccharum based on comparative genomics

Weichang Hu (3503660)
Xiuting Hua (3771160)
Qing Zhang (1802)
Jianping Wang (215292)
Qiaochu Shen (5944217)
Xingtan Zhang (694798)
Kai Wang (21246)
Qingyi Yu (734375)
Yann-Rong Lin (3169416)
Ray Ming (591215)
Jisen Zhang (3445649)

November 2018

A schematic diagram for the relationship of the four clades of the phylogenetic tree constructed by ...

Additional file 6: of Physiological and transcriptional analyses of developmental stages along sugarcane leaf

Lucia Mattiello (345378)
Diego Riaño-Pachón (3430481)
Marina Martins (3430472)
Larissa da Cruz (3430469)
Denis Bassi (3430457)
Paulo Marchiori (3430463)
Rafael Ribeiro (3430466)
Mônica Labate (3430484)
Carlos Labate (3430451)
Marcelo Menossi (25694)

December 2015

Table with the list of orthologous genes between the five species: Sorghum bicolor (Abbreviation: SB...

Additional file 11 of Genome-wide analysis of R2R3-MYB transcription factors family in the autopolyploid Saccharum spontaneum: an exploration of dominance expression and stress response

Yuan Yuan (25702)
Xiping Yang (647673)
Mengfan Feng (11287220)
Hongyan Ding (3582344)
Muhammad Tahir Khan (8691594)
Jisen Zhang (3445649)
Muqing Zhang (481513)

August 2021

Additional file 11: Figure S2. Comparison of phylogeny and gene structure of R2R3-MYB gene between S...

Additional file 9: Table S5. of Comparative structural analysis of Bru1 region homeologs in Saccharum spontaneum and S. officinarum

Jisen Zhang (3445649)
Anupma Sharma (257041)
Qingyi Yu (734375)
Jianping Wang (215292)
Leiting Li (3445646)
Lin Zhu (192179)
Xingtan Zhang (694798)
Youqiang Chen (1544623)
Ray Ming (591215)

June 2016

Estimated insertion time of full length retrotransposons in Bru1 locus of LA Purple (S. officinarum)...

Additional file 1: Figure S1. of Comparative genomics of Fructobacillus spp. and Leuconostoc spp. reveals niche-specific evolution of Fructobacillus spp.

Akihito Endo (330538)
Yasuhiro Tanizawa (1499266)
Naoto Tanaka (20817)
Shintaro Maeno (3454589)
Himanshu Kumar (778096)
Yuh Shiwa (512008)
Sanae Okada (3454592)
Hirofumi Yoshikawa (231503)
Leon Dicks (3454595)
Junichi Nakagawa (1866295)
Masanori Arita (80282)

December 2015

Comparison of gene content profiles obtained for the genera Fructobacillus and Leuconostoc. The Mann...

Additional file 2: of Analysis of the diversity and tissue specificity of sucrose synthase genes in the long read transcriptome of sugarcane

Prathima Thirugnanasambandam (4041584)
Patrick Mason (4041587)
Nam Hoang (4041575)
Agnelo Furtado (1823)
Frederik Botha (4041572)
Robert Henry (108785)

April 2019

Figure S1. Identification and sequence retrieval of SuSy transcripts from the SUGIT transcriptome re...

Additional file 3: of The Solanum chacoense Fertilization-Related Kinase 3 (ScFRK3) is involved in male and female gametophyte development

Caroline Daigle (3481145)
Benjamin Mazin (6708722)
Daniel Matton (3481148)

May 2019

Figure S2. Phylogenetic tree showing the relations between the AtMPKs, SlMPKs and the ScMPKs found i...

Additional file 3: Table S7. of Association of variation in the sugarcane transcriptome with sugar content

Prathima Thirugnanasambandam (4041584)
Nam Hoang (4041575)
Agnelo Furtado (1823)
Frederick Botha (4616092)
Robert Henry (108785)

November 2017

List of DEGs in the SUGIT, HST VS HSB. Table S8 List of DEGs in the SUGIT, LST VS LSB. Table S9 List...

Additional file 3: of Evolution and expression of the fructokinase gene family in Saccharum

Abstract

Extracted data

Additional file 3: of Evolution and expression of the fructokinase gene family in Saccharum

Abstract

Extracted data

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