Additional file 3: of New insights into the evolution and functional divergence of the SWEET family in Saccharum based on comparative genomics

Additional file 11: Figure S5. of Comparative structural analysis of Bru1 region homeologs in Saccharum spontaneum and S. officinarum

Jisen Zhang (3445649)
Anupma Sharma (257041)
Qingyi Yu (734375)
Jianping Wang (215292)
Leiting Li (3445646)
Lin Zhu (192179)
Xingtan Zhang (694798)
Youqiang Chen (1544623)
Ray Ming (591215)

June 2016

Phylogenetic analysis of 14 haplotypes of genes 11 from Saccharum species, and its homologs from sor...

Additional file 2: of Analysis of evolution and genetic diversity of sweetpotato and its related different polyploidy wild species I. trifida using RAD-seq

J. Feng (1603219)
M. Li (621494)
S. Zhao (1466308)
C. Zhang (4455028)
S. Yang (2246380)
S. Qiao (5722520)
W. Tan (2246281)
H. Qu (3958607)
D. Wang (727618)
Z. Pu (5722523)

September 2018

Table S1. The distribution of SSR loci with different SSR unit and different unit number. (DOCX 27 k...

Additional file 7: of Comparative transcriptomics identifies patterns of selection in roses

Shubin Li (756060)
Micai Zhong (6114584)
Xue Dong (545412)
Xiaodong Jiang (456292)
Yuxing Xu (2988792)
Yibo Sun (6114593)
Fang Cheng (138729)
De-zhu Li (5875247)
Kaixue Tang (6114599)
Siqing Wang (5572508)
Silan Dai (620222)
Jin-Yong Hu (3451760)

December 2018

Figure S2. Phylogenetic clustering of the four species based on the 4447 Rosaceae-common transcripts...

Additional file 4: of New insights into the evolution and functional divergence of the SWEET family in Saccharum based on comparative genomics

Weichang Hu (3503660)
Xiuting Hua (3771160)
Qing Zhang (1802)
Jianping Wang (215292)
Qiaochu Shen (5944217)
Xingtan Zhang (694798)
Kai Wang (21246)
Qingyi Yu (734375)
Yann-Rong Lin (3169416)
Ray Ming (591215)
Jisen Zhang (3445649)

November 2018

An unrooted tree using SWEET amino acid sequences from sugarcane, sorghum, maize and rice SWEET gene...

Additional file 8: of New insights into the evolution and functional divergence of the SWEET family in Saccharum based on comparative genomics

Weichang Hu (3503660)
Xiuting Hua (3771160)
Qing Zhang (1802)
Jianping Wang (215292)
Qiaochu Shen (5944217)
Xingtan Zhang (694798)
Kai Wang (21246)
Qingyi Yu (734375)
Yann-Rong Lin (3169416)
Ray Ming (591215)
Jisen Zhang (3445649)

November 2018

The primers for PCR verification of SWEET4e and SWEET16b in two Saccharum species. (DOCX 17 kb

Additional file 5: of New insights into the evolution and functional divergence of the SWEET family in Saccharum based on comparative genomics

Weichang Hu (3503660)
Xiuting Hua (3771160)
Qing Zhang (1802)
Jianping Wang (215292)
Qiaochu Shen (5944217)
Xingtan Zhang (694798)
Kai Wang (21246)
Qingyi Yu (734375)
Yann-Rong Lin (3169416)
Ray Ming (591215)
Jisen Zhang (3445649)

November 2018

A RT-qPCR verification of SWEET2b and SWEET4b in partial tissues of two Saccharum species. Note: IN,...

Additional file 7: of Comparative genomics revealed the gene evolution and functional divergence of magnesium transporter families in Saccharum

Yongjun Wang (134570)
Xiuting Hua (3771160)
Jingsheng Xu (184529)
Zhichang Chen (6262175)
Tianqu Fan (6262178)
Zhaohui Zeng (6262181)
Hengbo Wang (6262184)
Ai-Ling Hour (114314)
Qingyi Yu (734375)
Ray Ming (591215)
Jisen Zhang (3445649)

January 2019

A schematic diagram for the relationship of the 5 clades of the phylogenetic tree constructed by NJ ...

Additional file 3: of Evolution and expression of the fructokinase gene family in Saccharum

Yihong Chen (2013736)
Qing Zhang (1802)
Weichang Hu (3503660)
Xingtan Zhang (694798)
Liming Wang (114648)
Xiuting Hua (3771160)
Qingyi Yu (734375)
Ray Ming (591215)
Jisen Zhang (3445649)

February 2017

Comparison of gene expression levels of SsFRK gene family members by qRT-PCR and RNA-Seq. PM: premat...

Additional file 8: of A genome-wide analysis of SWEET gene family in cotton and their expressions under different stresses

Lanjie ZHAO (5590889)
Jinbo YAO (5590892)
Wei CHEN (2902277)
Yan LI (5590895)
Youjun LĂ (5590898)
Yan GUO (5590901)
Junyi WANG (5590904)
Li YUAN (5590907)
Ziyang LIU (5590910)
Yongshan ZHANG (5590913)

August 2018

Figure S4. Phylogenetic relationships, gene structure and domain compositions of the GbSWEET genes. ...

Additional file 6: of Comparative genomics revealed the gene evolution and functional divergence of magnesium transporter families in Saccharum

Yongjun Wang (134570)
Xiuting Hua (3771160)
Jingsheng Xu (184529)
Zhichang Chen (6262175)
Tianqu Fan (6262178)
Zhaohui Zeng (6262181)
Hengbo Wang (6262184)
Ai-Ling Hour (114314)
Qingyi Yu (734375)
Ray Ming (591215)
Jisen Zhang (3445649)

January 2019

Phylogenetic analysis of MGTs from 16 plant species by Maximum Likelihood method. (PDF 53 kb

Additional file 3: of Genome-wide characterization and expression profiling of SWEET genes in cabbage (Brassica oleracea var. capitata L.) reveal their roles in chilling and clubroot disease responses

Wei Zhang (405)
Shenyun Wang (4908298)
Fangwei Yu (401152)
Jun Tang (32983)
Xi Shan (6275843)
Kan Bao (5926043)
Li Yu (81651)
Hong Wang (13528)
Zhangjun Fei (14143)
Jianbin Li (312148)

January 2019

Figure S1. Phylogenetic tree of B. oleracea, B. rapa and A. thaliana SWEET proteins. Phylogenetic an...

Additional file 1: of Analysis of evolution and genetic diversity of sweetpotato and its related different polyploidy wild species I. trifida using RAD-seq

J. Feng (1603219)
M. Li (621494)
S. Zhao (1466308)
C. Zhang (4455028)
S. Yang (2246380)
S. Qiao (5722520)
W. Tan (2246281)
H. Qu (3958607)
D. Wang (727618)
Z. Pu (5722523)

September 2018

Figure S1. The distribution of reads number in different average fragments depth. Figure S2. The dis...

Additional file 4: of Formation of chimeric genes with essential functions at the origin of eukaryotes

RaphaĂŤl MĂŠheust (4959907)
Debashish Bhattacharya (35009)
Jananan Pathmanathan (3421295)
James McInerney (4959910)
Philippe Lopez (685621)
Eric Bapteste (11617)

March 2018

Figure S4. Putative phylogeny of eukaryotes, based on He et al. [85], that shows the distribution of...

Additional file 3: of Genome-wide analysis of GRAS transcription factor gene family in Gossypium hirsutum L.

Bin Zhang (64682)
J. Liu (3658174)
Zhao Yang (358244)
Er Chen (5198534)
Chao Zhang (4202110)
Xue Zhang (166886)
Fu Li (446847)

May 2018

Figure S6. Phylogenetic trees and evolutionary profile of GRAS genes in green plants. (A) Phylogenet...

Additional file 12: of Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism

Vikram Misra (470450)
Eric Wafula (4476616)
Yu Wang (12152)
Claude dePamphilis (3246285)
Michael Timko (4612192)

May 2019

MEME motifs and their associations with clades of MSTs, SUTs or SWEETs. These associations were dete...

Additional file 11: Figure S5. of Comparative structural analysis of Bru1 region homeologs in Saccharum spontaneum and S. officinarum

Jisen Zhang (3445649)
Anupma Sharma (257041)
Qingyi Yu (734375)
Jianping Wang (215292)
Leiting Li (3445646)
Lin Zhu (192179)
Xingtan Zhang (694798)
Youqiang Chen (1544623)
Ray Ming (591215)

June 2016

Phylogenetic analysis of 14 haplotypes of genes 11 from Saccharum species, and its homologs from sor...

Additional file 2: of Analysis of evolution and genetic diversity of sweetpotato and its related different polyploidy wild species I. trifida using RAD-seq

J. Feng (1603219)
M. Li (621494)
S. Zhao (1466308)
C. Zhang (4455028)
S. Yang (2246380)
S. Qiao (5722520)
W. Tan (2246281)
H. Qu (3958607)
D. Wang (727618)
Z. Pu (5722523)

September 2018

Table S1. The distribution of SSR loci with different SSR unit and different unit number. (DOCX 27 k...

Additional file 7: of Comparative transcriptomics identifies patterns of selection in roses

Shubin Li (756060)
Micai Zhong (6114584)
Xue Dong (545412)
Xiaodong Jiang (456292)
Yuxing Xu (2988792)
Yibo Sun (6114593)
Fang Cheng (138729)
De-zhu Li (5875247)
Kaixue Tang (6114599)
Siqing Wang (5572508)
Silan Dai (620222)
Jin-Yong Hu (3451760)

December 2018

Figure S2. Phylogenetic clustering of the four species based on the 4447 Rosaceae-common transcripts...

Additional file 4: of New insights into the evolution and functional divergence of the SWEET family in Saccharum based on comparative genomics

Weichang Hu (3503660)
Xiuting Hua (3771160)
Qing Zhang (1802)
Jianping Wang (215292)
Qiaochu Shen (5944217)
Xingtan Zhang (694798)
Kai Wang (21246)
Qingyi Yu (734375)
Yann-Rong Lin (3169416)
Ray Ming (591215)
Jisen Zhang (3445649)

November 2018

An unrooted tree using SWEET amino acid sequences from sugarcane, sorghum, maize and rice SWEET gene...

Additional file 8: of New insights into the evolution and functional divergence of the SWEET family in Saccharum based on comparative genomics

Weichang Hu (3503660)
Xiuting Hua (3771160)
Qing Zhang (1802)
Jianping Wang (215292)
Qiaochu Shen (5944217)
Xingtan Zhang (694798)
Kai Wang (21246)
Qingyi Yu (734375)
Yann-Rong Lin (3169416)
Ray Ming (591215)
Jisen Zhang (3445649)

November 2018

The primers for PCR verification of SWEET4e and SWEET16b in two Saccharum species. (DOCX 17 kb

Additional file 5: of New insights into the evolution and functional divergence of the SWEET family in Saccharum based on comparative genomics

Weichang Hu (3503660)
Xiuting Hua (3771160)
Qing Zhang (1802)
Jianping Wang (215292)
Qiaochu Shen (5944217)
Xingtan Zhang (694798)
Kai Wang (21246)
Qingyi Yu (734375)
Yann-Rong Lin (3169416)
Ray Ming (591215)
Jisen Zhang (3445649)

November 2018

A RT-qPCR verification of SWEET2b and SWEET4b in partial tissues of two Saccharum species. Note: IN,...

Additional file 7: of Comparative genomics revealed the gene evolution and functional divergence of magnesium transporter families in Saccharum

Yongjun Wang (134570)
Xiuting Hua (3771160)
Jingsheng Xu (184529)
Zhichang Chen (6262175)
Tianqu Fan (6262178)
Zhaohui Zeng (6262181)
Hengbo Wang (6262184)
Ai-Ling Hour (114314)
Qingyi Yu (734375)
Ray Ming (591215)
Jisen Zhang (3445649)

January 2019

A schematic diagram for the relationship of the 5 clades of the phylogenetic tree constructed by NJ ...

Additional file 3: of Evolution and expression of the fructokinase gene family in Saccharum

Yihong Chen (2013736)
Qing Zhang (1802)
Weichang Hu (3503660)
Xingtan Zhang (694798)
Liming Wang (114648)
Xiuting Hua (3771160)
Qingyi Yu (734375)
Ray Ming (591215)
Jisen Zhang (3445649)

February 2017

Comparison of gene expression levels of SsFRK gene family members by qRT-PCR and RNA-Seq. PM: premat...

Additional file 8: of A genome-wide analysis of SWEET gene family in cotton and their expressions under different stresses

Lanjie ZHAO (5590889)
Jinbo YAO (5590892)
Wei CHEN (2902277)
Yan LI (5590895)
Youjun LĂ (5590898)
Yan GUO (5590901)
Junyi WANG (5590904)
Li YUAN (5590907)
Ziyang LIU (5590910)
Yongshan ZHANG (5590913)

August 2018

Figure S4. Phylogenetic relationships, gene structure and domain compositions of the GbSWEET genes. ...

Additional file 6: of Comparative genomics revealed the gene evolution and functional divergence of magnesium transporter families in Saccharum

Yongjun Wang (134570)
Xiuting Hua (3771160)
Jingsheng Xu (184529)
Zhichang Chen (6262175)
Tianqu Fan (6262178)
Zhaohui Zeng (6262181)
Hengbo Wang (6262184)
Ai-Ling Hour (114314)
Qingyi Yu (734375)
Ray Ming (591215)
Jisen Zhang (3445649)

January 2019

Phylogenetic analysis of MGTs from 16 plant species by Maximum Likelihood method. (PDF 53 kb

Additional file 3: of Genome-wide characterization and expression profiling of SWEET genes in cabbage (Brassica oleracea var. capitata L.) reveal their roles in chilling and clubroot disease responses

Wei Zhang (405)
Shenyun Wang (4908298)
Fangwei Yu (401152)
Jun Tang (32983)
Xi Shan (6275843)
Kan Bao (5926043)
Li Yu (81651)
Hong Wang (13528)
Zhangjun Fei (14143)
Jianbin Li (312148)

January 2019

Figure S1. Phylogenetic tree of B. oleracea, B. rapa and A. thaliana SWEET proteins. Phylogenetic an...

Additional file 1: of Analysis of evolution and genetic diversity of sweetpotato and its related different polyploidy wild species I. trifida using RAD-seq

J. Feng (1603219)
M. Li (621494)
S. Zhao (1466308)
C. Zhang (4455028)
S. Yang (2246380)
S. Qiao (5722520)
W. Tan (2246281)
H. Qu (3958607)
D. Wang (727618)
Z. Pu (5722523)

September 2018

Figure S1. The distribution of reads number in different average fragments depth. Figure S2. The dis...

Additional file 4: of Formation of chimeric genes with essential functions at the origin of eukaryotes

RaphaĂŤl MĂŠheust (4959907)
Debashish Bhattacharya (35009)
Jananan Pathmanathan (3421295)
James McInerney (4959910)
Philippe Lopez (685621)
Eric Bapteste (11617)

March 2018

Figure S4. Putative phylogeny of eukaryotes, based on He et al. [85], that shows the distribution of...

Additional file 3: of Genome-wide analysis of GRAS transcription factor gene family in Gossypium hirsutum L.

Bin Zhang (64682)
J. Liu (3658174)
Zhao Yang (358244)
Er Chen (5198534)
Chao Zhang (4202110)
Xue Zhang (166886)
Fu Li (446847)

May 2018

Figure S6. Phylogenetic trees and evolutionary profile of GRAS genes in green plants. (A) Phylogenet...

Additional file 12: of Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism

Vikram Misra (470450)
Eric Wafula (4476616)
Yu Wang (12152)
Claude dePamphilis (3246285)
Michael Timko (4612192)

May 2019

MEME motifs and their associations with clades of MSTs, SUTs or SWEETs. These associations were dete...

Additional file 11: Figure S5. of Comparative structural analysis of Bru1 region homeologs in Saccharum spontaneum and S. officinarum

Jisen Zhang (3445649)
Anupma Sharma (257041)
Qingyi Yu (734375)
Jianping Wang (215292)
Leiting Li (3445646)
Lin Zhu (192179)
Xingtan Zhang (694798)
Youqiang Chen (1544623)
Ray Ming (591215)

June 2016

Phylogenetic analysis of 14 haplotypes of genes 11 from Saccharum species, and its homologs from sor...

Additional file 2: of Analysis of evolution and genetic diversity of sweetpotato and its related different polyploidy wild species I. trifida using RAD-seq

J. Feng (1603219)
M. Li (621494)
S. Zhao (1466308)
C. Zhang (4455028)
S. Yang (2246380)
S. Qiao (5722520)
W. Tan (2246281)
H. Qu (3958607)
D. Wang (727618)
Z. Pu (5722523)

September 2018

Table S1. The distribution of SSR loci with different SSR unit and different unit number. (DOCX 27 k...

Additional file 7: of Comparative transcriptomics identifies patterns of selection in roses

Shubin Li (756060)
Micai Zhong (6114584)
Xue Dong (545412)
Xiaodong Jiang (456292)
Yuxing Xu (2988792)
Yibo Sun (6114593)
Fang Cheng (138729)
De-zhu Li (5875247)
Kaixue Tang (6114599)
Siqing Wang (5572508)
Silan Dai (620222)
Jin-Yong Hu (3451760)

December 2018

Figure S2. Phylogenetic clustering of the four species based on the 4447 Rosaceae-common transcripts...

Additional file 3: of New insights into the evolution and functional divergence of the SWEET family in Saccharum based on comparative genomics

Abstract

Extracted data

Additional file 3: of New insights into the evolution and functional divergence of the SWEET family in Saccharum based on comparative genomics

Abstract

Extracted data

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