Module and pathway enrichments for gene families with invariable abundances in every phylum-specific test (Fisherâs exact test, qâ¤0.25). (CSV 3 kb
Figure S2. Phyla identified along the gastrointestinal tract by culturomics (number of identified sp...
Figure S3. Distribution of pathways in culture-independent or culture-enriched microbiomes. Pathways...
Figure S1. Analysis of relative abundance of PolyFermS commensal bacteria phyla. Relative abundance ...
Module and pathway enrichments for variable/high-PD and invariable/low-PD gene sets (Fisherâs exac...
Figure S14. Comparison between Bacteroidetes- and Firmicutes-specific variable and invariable genes....
Figure S13. Genes only annotated in Proteobacteria or Euryarchaeota, but not Actinobacteria or Firmi...
Figure S10. Violin plots showing distributions of abundant phyla. (A) Abundance and (B) logit-transf...
Figure S5. The mode estimator is robust to changes in the proportion of true positives and the ratio...
BackgroundWhile human gut microbiomes vary significantly in taxonomic composition, biological pathwa...
Figure S11. Number of leaves correlates with tree density, but tree density corrects for the overall...
Figure S1. The mean-variance relationship does not depend on the total number of samples. The glucos...
Figure S4. Size parameter estimation affects power and Îą, with the mode method-of-moments giving th...
Figure S1. Diversity and abundance distribution of bacterial families in culture-independent or cult...
Figure S2. Relationship between the depth of sequencing and sum of the assembled contigs associated ...
Figure S4. Proportion of samples and enzymes positive per cluster per condition. For each combinatio...
Figure S2. Phyla identified along the gastrointestinal tract by culturomics (number of identified sp...
Figure S3. Distribution of pathways in culture-independent or culture-enriched microbiomes. Pathways...
Figure S1. Analysis of relative abundance of PolyFermS commensal bacteria phyla. Relative abundance ...
Module and pathway enrichments for variable/high-PD and invariable/low-PD gene sets (Fisherâs exac...
Figure S14. Comparison between Bacteroidetes- and Firmicutes-specific variable and invariable genes....
Figure S13. Genes only annotated in Proteobacteria or Euryarchaeota, but not Actinobacteria or Firmi...
Figure S10. Violin plots showing distributions of abundant phyla. (A) Abundance and (B) logit-transf...
Figure S5. The mode estimator is robust to changes in the proportion of true positives and the ratio...
BackgroundWhile human gut microbiomes vary significantly in taxonomic composition, biological pathwa...
Figure S11. Number of leaves correlates with tree density, but tree density corrects for the overall...
Figure S1. The mean-variance relationship does not depend on the total number of samples. The glucos...
Figure S4. Size parameter estimation affects power and Îą, with the mode method-of-moments giving th...
Figure S1. Diversity and abundance distribution of bacterial families in culture-independent or cult...
Figure S2. Relationship between the depth of sequencing and sum of the assembled contigs associated ...
Figure S4. Proportion of samples and enzymes positive per cluster per condition. For each combinatio...
Figure S2. Phyla identified along the gastrointestinal tract by culturomics (number of identified sp...
Figure S3. Distribution of pathways in culture-independent or culture-enriched microbiomes. Pathways...
Figure S1. Analysis of relative abundance of PolyFermS commensal bacteria phyla. Relative abundance ...
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