Figure S11. Number of leaves correlates with tree density, but tree density corrects for the overall rate of evolution. The number of leaves (i.e., individual sequences) was plotted vs. tree density on a log-log scatter plot, with each circle representing one gene family. Two outliers with lower density than expected were plotted in colors: a putative transposase (green) and a Staphylococcus leukotoxin (red). Both families have large numbers of sequences from the same organism. (PDF 492 kb
Figure S1. Diversity and abundance distribution of bacterial families in culture-independent or cult...
<p>Color node represents biological functions that were highly variant among fecal samples from diff...
BACKGROUND: Even when microbial communities vary wildly in their taxonomic composition, their functi...
Figure S10. Violin plots showing distributions of abundant phyla. (A) Abundance and (B) logit-transf...
Figure S14. Comparison between Bacteroidetes- and Firmicutes-specific variable and invariable genes....
Figure S13. Genes only annotated in Proteobacteria or Euryarchaeota, but not Actinobacteria or Firmi...
Figure S5. The mode estimator is robust to changes in the proportion of true positives and the ratio...
BackgroundWhile human gut microbiomes vary significantly in taxonomic composition, biological pathwa...
Module and pathway enrichments for gene families with invariable abundances in every phylum-specific...
Module and pathway enrichments for variable/high-PD and invariable/low-PD gene sets (Fisherâs exac...
Figure S4. Size parameter estimation affects power and Îą, with the mode method-of-moments giving th...
<div><p>The mechanisms by which different microbes colonize the healthy human gut versus other body ...
Figure S1. The mean-variance relationship does not depend on the total number of samples. The glucos...
Figure S2. Relationship between the depth of sequencing and sum of the assembled contigs associated ...
The gut microbiomes of human populations worldwide have many core microbial species in common. Howev...
Figure S1. Diversity and abundance distribution of bacterial families in culture-independent or cult...
<p>Color node represents biological functions that were highly variant among fecal samples from diff...
BACKGROUND: Even when microbial communities vary wildly in their taxonomic composition, their functi...
Figure S10. Violin plots showing distributions of abundant phyla. (A) Abundance and (B) logit-transf...
Figure S14. Comparison between Bacteroidetes- and Firmicutes-specific variable and invariable genes....
Figure S13. Genes only annotated in Proteobacteria or Euryarchaeota, but not Actinobacteria or Firmi...
Figure S5. The mode estimator is robust to changes in the proportion of true positives and the ratio...
BackgroundWhile human gut microbiomes vary significantly in taxonomic composition, biological pathwa...
Module and pathway enrichments for gene families with invariable abundances in every phylum-specific...
Module and pathway enrichments for variable/high-PD and invariable/low-PD gene sets (Fisherâs exac...
Figure S4. Size parameter estimation affects power and Îą, with the mode method-of-moments giving th...
<div><p>The mechanisms by which different microbes colonize the healthy human gut versus other body ...
Figure S1. The mean-variance relationship does not depend on the total number of samples. The glucos...
Figure S2. Relationship between the depth of sequencing and sum of the assembled contigs associated ...
The gut microbiomes of human populations worldwide have many core microbial species in common. Howev...
Figure S1. Diversity and abundance distribution of bacterial families in culture-independent or cult...
<p>Color node represents biological functions that were highly variant among fecal samples from diff...
BACKGROUND: Even when microbial communities vary wildly in their taxonomic composition, their functi...