Figure S4. Size parameter estimation affects power and Îą, with the mode method-of-moments giving the best control. Îą (A) was minimized and power (B) was maximized when the mode method-of-moments estimator was used to get estimates of the study-specific dispersion parameters k y Ě $\widehat {k_{y}}$ . Bars are from four simulations. The proportion of variable/invariable gene families was 0.4, and 43% of genes were true positives. (PDF 44 kb
Abstract The human gut is colonized with a myriad of microbes, with substantial interpersonal variat...
The gut microbiome plays a profound role in human health. Over the last decade, much work has been d...
peer reviewedThe human gut microbiome represents a complex ecosystem contributing essential function...
Figure S5. The mode estimator is robust to changes in the proportion of true positives and the ratio...
Figure S1. The mean-variance relationship does not depend on the total number of samples. The glucos...
Figure S10. Violin plots showing distributions of abundant phyla. (A) Abundance and (B) logit-transf...
Figure S14. Comparison between Bacteroidetes- and Firmicutes-specific variable and invariable genes....
Figure S11. Number of leaves correlates with tree density, but tree density corrects for the overall...
Figure S13. Genes only annotated in Proteobacteria or Euryarchaeota, but not Actinobacteria or Firmi...
Module and pathway enrichments for variable/high-PD and invariable/low-PD gene sets (Fisherâs exac...
Module and pathway enrichments for gene families with invariable abundances in every phylum-specific...
BackgroundWhile human gut microbiomes vary significantly in taxonomic composition, biological pathwa...
Four bacterial families comprise most the biological variation in our study. Relative biological var...
Dynamics inferred in the balance between the Enterobacteriaceae and all other taxa does not correlat...
The human gut is colonized with a myriad of microbes, with substantial interpersonal variation. This...
Abstract The human gut is colonized with a myriad of microbes, with substantial interpersonal variat...
The gut microbiome plays a profound role in human health. Over the last decade, much work has been d...
peer reviewedThe human gut microbiome represents a complex ecosystem contributing essential function...
Figure S5. The mode estimator is robust to changes in the proportion of true positives and the ratio...
Figure S1. The mean-variance relationship does not depend on the total number of samples. The glucos...
Figure S10. Violin plots showing distributions of abundant phyla. (A) Abundance and (B) logit-transf...
Figure S14. Comparison between Bacteroidetes- and Firmicutes-specific variable and invariable genes....
Figure S11. Number of leaves correlates with tree density, but tree density corrects for the overall...
Figure S13. Genes only annotated in Proteobacteria or Euryarchaeota, but not Actinobacteria or Firmi...
Module and pathway enrichments for variable/high-PD and invariable/low-PD gene sets (Fisherâs exac...
Module and pathway enrichments for gene families with invariable abundances in every phylum-specific...
BackgroundWhile human gut microbiomes vary significantly in taxonomic composition, biological pathwa...
Four bacterial families comprise most the biological variation in our study. Relative biological var...
Dynamics inferred in the balance between the Enterobacteriaceae and all other taxa does not correlat...
The human gut is colonized with a myriad of microbes, with substantial interpersonal variation. This...
Abstract The human gut is colonized with a myriad of microbes, with substantial interpersonal variat...
The gut microbiome plays a profound role in human health. Over the last decade, much work has been d...
peer reviewedThe human gut microbiome represents a complex ecosystem contributing essential function...