Additional file 7. Nucleotide composition of the sequence of the TATA and TATA-like genes. A) Frequency of each nucleotide in the TATA (red) and TATA-like genes (blue) at each position in relation to the TSS. B) The average nucleotide frequency in the promoter (− 500 to − 100) and the gene body (50–500) of the TATA and TATA-like genes. A Student’s t test was applied to compare the TATA and TATA-like genes. S indicates that the difference is significant (p < 0.001). N indicates that the difference is not significant (p > 0.001)
For each motif, 10 randomly matching hits were searched for in upstream promoter regions (both 1 kb ...
Hown with the nucleosome positions from Ozsolak (2007) denoted by black bars superimposed on the NXS...
<p><sup>a</sup> Average pairwise nucleotide difference per site.</p><p><sup>b</sup> Average number o...
Additional file 10. Effect of the absence of TFIIS on the expression of the different types of genes...
Additional file 8. Nucleosome positioning of genes with significant changes between wt and dst1∆. Ge...
Additional file 9. Nucleosome fuzziness in the wt and dst1∆. A) The metagene analysis of the fuzzine...
TFIIS stimulates RNA cleavage by RNA polymerase II and promotes the resolution of backtracking event...
Abstract Background TFIIS stimulates RNA cleavage by RNA polymerase II and promotes the resolution o...
Additional file 3. Comparison with chemical mapping method. A) Center-to-center distance of the near...
<p>The left panel shows the distribution of substitution rate (blue), indel rate (red), and H2A.Z nu...
Understanding chromatin function requires knowing the precise location of nucleosomes. MNase-seq met...
<p><b>A</b>. The predicted nucleosomes for each gene kinetic class (IE, E, L), and <b>B</b>. sub-cla...
(A) Average nucleosome occupancy, (B) 2D occupancy plots and (C) heatmaps showing nucleosome density...
<p>(A) Comparison of the minor allele frequency of SNPs predicted to affect binding or to be silent,...
<p>(A) Correlation between 10 bp long dinucleotide patterns composed of one copy of each SS, WW, YY ...
For each motif, 10 randomly matching hits were searched for in upstream promoter regions (both 1 kb ...
Hown with the nucleosome positions from Ozsolak (2007) denoted by black bars superimposed on the NXS...
<p><sup>a</sup> Average pairwise nucleotide difference per site.</p><p><sup>b</sup> Average number o...
Additional file 10. Effect of the absence of TFIIS on the expression of the different types of genes...
Additional file 8. Nucleosome positioning of genes with significant changes between wt and dst1∆. Ge...
Additional file 9. Nucleosome fuzziness in the wt and dst1∆. A) The metagene analysis of the fuzzine...
TFIIS stimulates RNA cleavage by RNA polymerase II and promotes the resolution of backtracking event...
Abstract Background TFIIS stimulates RNA cleavage by RNA polymerase II and promotes the resolution o...
Additional file 3. Comparison with chemical mapping method. A) Center-to-center distance of the near...
<p>The left panel shows the distribution of substitution rate (blue), indel rate (red), and H2A.Z nu...
Understanding chromatin function requires knowing the precise location of nucleosomes. MNase-seq met...
<p><b>A</b>. The predicted nucleosomes for each gene kinetic class (IE, E, L), and <b>B</b>. sub-cla...
(A) Average nucleosome occupancy, (B) 2D occupancy plots and (C) heatmaps showing nucleosome density...
<p>(A) Comparison of the minor allele frequency of SNPs predicted to affect binding or to be silent,...
<p>(A) Correlation between 10 bp long dinucleotide patterns composed of one copy of each SS, WW, YY ...
For each motif, 10 randomly matching hits were searched for in upstream promoter regions (both 1 kb ...
Hown with the nucleosome positions from Ozsolak (2007) denoted by black bars superimposed on the NXS...
<p><sup>a</sup> Average pairwise nucleotide difference per site.</p><p><sup>b</sup> Average number o...