(A) Average nucleosome occupancy, (B) 2D occupancy plots and (C) heatmaps showing nucleosome density represented relative to TAS. Red: High nucleosome density; blue: low nucleosome density. TAS predictions were made with UTRme using five transcriptomic data sets previously published (SRR2177699, SRR9202394, SRR2177820, SRR2180340, SRR2177823 [33].</p
Additional file 3. Comparison with chemical mapping method. A) Center-to-center distance of the near...
<div><p>We describe a model-based method, PING, for predicting nucleosome positions in MNase-Seq and...
We describe a model-based method, PING, for predicting nucleosome positions in MNase-Seq and MNase- ...
Additional file 9. Nucleosome fuzziness in the wt and dst1∆. A) The metagene analysis of the fuzzine...
Contains fulltext : 181046.pdf (Publisher’s version ) (Closed access
<p>A. MNase midpoint density (smoothed using a 30 bp sliding window) across a 76 kb region near the ...
A. Outline of the MNase-seq experiment. Thick grey line indicates the presence of EdU in culture med...
Nucleosomes are the basic repeating units of eukaryotic chromatin. They play important roles in chro...
Additional file 7. Nucleotide composition of the sequence of the TATA and TATA-like genes. A) Freque...
<p>A. Mean MNase midpoint depth around ChIP-seq peak summits, aggregated across 5 transcription fact...
<p>(<b>A</b>–<b>C</b>) Density plot comparison between the normalized coverage per base pair in the ...
Additional file 10. Effect of the absence of TFIIS on the expression of the different types of genes...
Understanding chromatin function requires knowing the precise location of nucleosomes. MNase-seq met...
<p>A. Distribution of nucleosome positioning scores from a random sample of one million 200 bp regio...
<p>(a) Tracks of nucleosome occupancy are displayed across the Pou51f (Oct4) gene. In vivo nucleosom...
Additional file 3. Comparison with chemical mapping method. A) Center-to-center distance of the near...
<div><p>We describe a model-based method, PING, for predicting nucleosome positions in MNase-Seq and...
We describe a model-based method, PING, for predicting nucleosome positions in MNase-Seq and MNase- ...
Additional file 9. Nucleosome fuzziness in the wt and dst1∆. A) The metagene analysis of the fuzzine...
Contains fulltext : 181046.pdf (Publisher’s version ) (Closed access
<p>A. MNase midpoint density (smoothed using a 30 bp sliding window) across a 76 kb region near the ...
A. Outline of the MNase-seq experiment. Thick grey line indicates the presence of EdU in culture med...
Nucleosomes are the basic repeating units of eukaryotic chromatin. They play important roles in chro...
Additional file 7. Nucleotide composition of the sequence of the TATA and TATA-like genes. A) Freque...
<p>A. Mean MNase midpoint depth around ChIP-seq peak summits, aggregated across 5 transcription fact...
<p>(<b>A</b>–<b>C</b>) Density plot comparison between the normalized coverage per base pair in the ...
Additional file 10. Effect of the absence of TFIIS on the expression of the different types of genes...
Understanding chromatin function requires knowing the precise location of nucleosomes. MNase-seq met...
<p>A. Distribution of nucleosome positioning scores from a random sample of one million 200 bp regio...
<p>(a) Tracks of nucleosome occupancy are displayed across the Pou51f (Oct4) gene. In vivo nucleosom...
Additional file 3. Comparison with chemical mapping method. A) Center-to-center distance of the near...
<div><p>We describe a model-based method, PING, for predicting nucleosome positions in MNase-Seq and...
We describe a model-based method, PING, for predicting nucleosome positions in MNase-Seq and MNase- ...