Hown with the nucleosome positions from Ozsolak (2007) denoted by black bars superimposed on the NXSensor graphics. The results and correlations of several other genes can be found in Additional file . (b) The promoter regions of the yeast benchmark genes CHA1 and HIS3 are shown with the nucleosome positions from Lee (2007) denoted by black bars as above. The NXScore results were uploaded as a Custom Track on the UCSC Genome Browser, and a snapshot was taken with the human RefSeq genes track (a), or the protein coding genes track from yeast (b). (c) The correlation between the mean NXScores for the TSS-200 to TSS+200 promoter region of 19055 genes, and the calculated average (5 = 3) data of 57 MITF-bound promoters in the human genome.<p><b>...
Motivation: The nucleosome is the basic repeating unit of chromatin. It contains two copies each of ...
Computational prediction of eukaryotic promoters from the nucleotide sequence is one of the most att...
The identification of important factors that affect nucleosome formation is critical to clarify nucl...
Ole gene (TSS to end of 3'UTR), and the sorted list was divided into (a) 5 and (b) 10 groups. The me...
Shown above are the NXScores for two neighboring genes on chromosome 21. The figure was prepared by ...
Shown above are the NXScores for two neighboring genes on chromosome 21. The figure was prepared by ...
Abstract Background Nucleosomes are the basic structural units of eukaryotic chromatin, and they pla...
Sity around the peaks and the average cleavage intensity for that whole region, for all ENCODE regio...
Ific genes, those with the narrowest tissue distribution, the green line represents the mean across ...
Lations between NXScores and DNaseI hypersensitive sites for all ENCODE regions of hg18.<p><b>Copyri...
<p>(<b>A</b>) Position of five analyzed nucleosomes (blue rectangles) and binding sites of transcrip...
For the -1500 to +500 promoter regions, and the mean tissue specificity level for each band was calc...
The identification of important factors that affect nucleosome formation is critical to clarify nucl...
The identification of important factors that affect nucleosome formation is critical to clarify nucl...
Motivation: Nucleosome organization of DNA plays the key role in transcription initiation. Exhaustiv...
Motivation: The nucleosome is the basic repeating unit of chromatin. It contains two copies each of ...
Computational prediction of eukaryotic promoters from the nucleotide sequence is one of the most att...
The identification of important factors that affect nucleosome formation is critical to clarify nucl...
Ole gene (TSS to end of 3'UTR), and the sorted list was divided into (a) 5 and (b) 10 groups. The me...
Shown above are the NXScores for two neighboring genes on chromosome 21. The figure was prepared by ...
Shown above are the NXScores for two neighboring genes on chromosome 21. The figure was prepared by ...
Abstract Background Nucleosomes are the basic structural units of eukaryotic chromatin, and they pla...
Sity around the peaks and the average cleavage intensity for that whole region, for all ENCODE regio...
Ific genes, those with the narrowest tissue distribution, the green line represents the mean across ...
Lations between NXScores and DNaseI hypersensitive sites for all ENCODE regions of hg18.<p><b>Copyri...
<p>(<b>A</b>) Position of five analyzed nucleosomes (blue rectangles) and binding sites of transcrip...
For the -1500 to +500 promoter regions, and the mean tissue specificity level for each band was calc...
The identification of important factors that affect nucleosome formation is critical to clarify nucl...
The identification of important factors that affect nucleosome formation is critical to clarify nucl...
Motivation: Nucleosome organization of DNA plays the key role in transcription initiation. Exhaustiv...
Motivation: The nucleosome is the basic repeating unit of chromatin. It contains two copies each of ...
Computational prediction of eukaryotic promoters from the nucleotide sequence is one of the most att...
The identification of important factors that affect nucleosome formation is critical to clarify nucl...