<p><b>A</b>. The predicted nucleosomes for each gene kinetic class (IE, E, L), and <b>B</b>. sub-class (late, leaky, true) were compared to the maximum number of nucleosomes to give the nucleosome saturation, which is expressed as a %. The average % saturation of IE genes was not significantly different than the average saturation of the E genes or that of the Late genes (57 of 66 analyzed) using a non-parametric Wilcoxon rank sum test, although the IE genes did trend lower. Error bars represents the standard deviation.</p
<p>The left panel shows genetic variation rates (blue: substitution, red: indel) and H2A.Z nucleosom...
<p>Data are aggregated across dsQTLs and are scaled by the total number of sequenced reads. The DNas...
<p>Box plots of nucleosome shifts for 20 conditions that show a median deviation of at least 4 base ...
<p><b>A:</b> Fraction of information regarding experimentally annotated linker and nucleosome positi...
<p><b>A</b>. The nucleosome signal is shown in the region covering the late gene VP16 (UL48) a tegum...
<p><b>A</b>: Averaged nucleosome coverage near transcription starts. Each curve shows the average nu...
Statistical positioning, the localization of nucleo-somes packed against a fixed barrier, is conject...
<p>The left panel shows the distribution of substitution rate (blue), indel rate (red), and H2A.Z nu...
Additional file 7. Nucleotide composition of the sequence of the TATA and TATA-like genes. A) Freque...
Ole gene (TSS to end of 3'UTR), and the sorted list was divided into (a) 5 and (b) 10 groups. The me...
(A) Integrated genome viewer (igv) snapshot displaying the rDNA locus (two repeats). Nucleosome occu...
<p>The top line represents the average nucleosome occupancy predictions from our model. The second g...
Ific genes, those with the narrowest tissue distribution, the green line represents the mean across ...
<p>(a) Tracks of nucleosome occupancy are displayed across the Pou51f (Oct4) gene. In vivo nucleosom...
<p><b>A</b> and <b>B</b>. The nucleosome signal is shown for the region covering two immediate early...
<p>The left panel shows genetic variation rates (blue: substitution, red: indel) and H2A.Z nucleosom...
<p>Data are aggregated across dsQTLs and are scaled by the total number of sequenced reads. The DNas...
<p>Box plots of nucleosome shifts for 20 conditions that show a median deviation of at least 4 base ...
<p><b>A:</b> Fraction of information regarding experimentally annotated linker and nucleosome positi...
<p><b>A</b>. The nucleosome signal is shown in the region covering the late gene VP16 (UL48) a tegum...
<p><b>A</b>: Averaged nucleosome coverage near transcription starts. Each curve shows the average nu...
Statistical positioning, the localization of nucleo-somes packed against a fixed barrier, is conject...
<p>The left panel shows the distribution of substitution rate (blue), indel rate (red), and H2A.Z nu...
Additional file 7. Nucleotide composition of the sequence of the TATA and TATA-like genes. A) Freque...
Ole gene (TSS to end of 3'UTR), and the sorted list was divided into (a) 5 and (b) 10 groups. The me...
(A) Integrated genome viewer (igv) snapshot displaying the rDNA locus (two repeats). Nucleosome occu...
<p>The top line represents the average nucleosome occupancy predictions from our model. The second g...
Ific genes, those with the narrowest tissue distribution, the green line represents the mean across ...
<p>(a) Tracks of nucleosome occupancy are displayed across the Pou51f (Oct4) gene. In vivo nucleosom...
<p><b>A</b> and <b>B</b>. The nucleosome signal is shown for the region covering two immediate early...
<p>The left panel shows genetic variation rates (blue: substitution, red: indel) and H2A.Z nucleosom...
<p>Data are aggregated across dsQTLs and are scaled by the total number of sequenced reads. The DNas...
<p>Box plots of nucleosome shifts for 20 conditions that show a median deviation of at least 4 base ...