Breaking changes: AMICI requires Python>=3.7 Updated package installation (PEP517/518): Creating source distributions requires https://github.com/pypa/build (#1384) (but now handles all package building dependencies properly) Features: More flexible state reinitialization (#1417) Updated dependencies: Upgrade to sundials 5.7.0 (#1392) Fixes: Python: account for heaviside functions in expressions (#1382) Python: allow loading of existing models in import_petab_problem (#1383) Python: Don't override user-provided compiler/linker flags (#1389) Python: PEtab import reinitialization fixes (#1417) Python: Fix PEtab observables for pysb models (#1390) Python: Substitute expressions in event condition expressions (#1404) Python: Unspecified...
Python Improve and extend available objective functions (#1235) Fix processing of compartment defin...
General Move repo to new organization (#1193) Update Bibliography Python Fix bug for energyPySB m...
Python: Implement support for variable compartments (#1036) Better handling of constant species (#1...
Python Fix pysb-petab support (#1288) Fix ExpData constructor overloading (#1299) Fix support for p...
New features: Python model import now supports SBML Events (#1443) Implement support for compilatio...
added python 3.8 support, dropped python 3.6 support (#898) Added logging functionality (#900) Fixe...
Fixed (re)initialization of sensitivities if ExpData::fixedParametersPreequilibration is set (#994) ...
New: Allow specifying maximum integration time via amici::Solver::setMaxTime() (#1530) Py: Add fail...
BREAKING CHANGE: Renaming {get|set}tNewtonPreequilibration to {get|set}Preequilibration (Closes #720...
Features / improvements: Speedup symbolic processing for ODE generation in python Bugfixes: Fix(p...
Fixes: Fix "maybe-uninitialized" compiler warning (#1495) Fix substitution of expressions in `droot...
Python Restore support for species references (#1358) Add support for noise models in pysb (#1360) ...
Features: Python package: more flexible HDF5 library localization Extended CI: python tests, preequ...
General: AMICI now comes with a logo implement getName function for models Updated documentation / ...
Python General improvements to SBML import (#1312, #1316, #1315, #1322 , #1324 #1333, #1329) Small ...
Python Improve and extend available objective functions (#1235) Fix processing of compartment defin...
General Move repo to new organization (#1193) Update Bibliography Python Fix bug for energyPySB m...
Python: Implement support for variable compartments (#1036) Better handling of constant species (#1...
Python Fix pysb-petab support (#1288) Fix ExpData constructor overloading (#1299) Fix support for p...
New features: Python model import now supports SBML Events (#1443) Implement support for compilatio...
added python 3.8 support, dropped python 3.6 support (#898) Added logging functionality (#900) Fixe...
Fixed (re)initialization of sensitivities if ExpData::fixedParametersPreequilibration is set (#994) ...
New: Allow specifying maximum integration time via amici::Solver::setMaxTime() (#1530) Py: Add fail...
BREAKING CHANGE: Renaming {get|set}tNewtonPreequilibration to {get|set}Preequilibration (Closes #720...
Features / improvements: Speedup symbolic processing for ODE generation in python Bugfixes: Fix(p...
Fixes: Fix "maybe-uninitialized" compiler warning (#1495) Fix substitution of expressions in `droot...
Python Restore support for species references (#1358) Add support for noise models in pysb (#1360) ...
Features: Python package: more flexible HDF5 library localization Extended CI: python tests, preequ...
General: AMICI now comes with a logo implement getName function for models Updated documentation / ...
Python General improvements to SBML import (#1312, #1316, #1315, #1322 , #1324 #1333, #1329) Small ...
Python Improve and extend available objective functions (#1235) Fix processing of compartment defin...
General Move repo to new organization (#1193) Update Bibliography Python Fix bug for energyPySB m...
Python: Implement support for variable compartments (#1036) Better handling of constant species (#1...