Python Fix pysb-petab support (#1288) Fix ExpData constructor overloading (#1299) Fix support for positivity enforcement (#1306) Refactor SBML import, adds support for parameter rate rules and initial assignments (#1284, #1296, #1304) Improve model generation for models with many parameters (#1300) Add support for PEtab based synthetic data generation (#1283) C++ Make HDF5 an optional dependency (#1285) Doc General Improvements to Documentation (#1289, #1291, #1292, #1293, #1294, #1286, #1277, #1281) CI Add python 3.9 support test (#1282) Allow manual triggering of GitHub actions (#1287) Remove appveyor config (#1295) Update GHA env and path management (#1302
Python Skip unnecessary expressions in pysb models (#1185) MSVC compiler support (this time for rea...
C++ Add SuperLUMT support (#681) Sparsified dJydy (#686) Enabled support of impulse-free events for...
Fixes: Fix "maybe-uninitialized" compiler warning (#1495) Fix substitution of expressions in `droot...
Breaking changes: AMICI requires Python>=3.7 Updated package installation (PEP517/518): Creating s...
Python Restore support for species references (#1358) Add support for noise models in pysb (#1360) ...
Python Improve and extend available objective functions (#1235) Fix processing of compartment defin...
added python 3.8 support, dropped python 3.6 support (#898) Added logging functionality (#900) Fixe...
Python Fix simplification for pysb models (#1168) Pass verbosity flags to pysb network generation (...
New features: Python model import now supports SBML Events (#1443) Implement support for compilatio...
Fixed (re)initialization of sensitivities if ExpData::fixedParametersPreequilibration is set (#994) ...
Python: Implement support for variable compartments (#1036) Better handling of constant species (#1...
Python General improvements to SBML import (#1312, #1316, #1315, #1322 , #1324 #1333, #1329) Small ...
Fixes: Fixed pysb pattern matching during PEtab import by @FFroehlich in https://github.com/AMICI-d...
New: Allow specifying maximum integration time via amici::Solver::setMaxTime() (#1530) Py: Add fail...
[python] Added numpy and python wrappers that provide a more user friendly python API [python] Enabl...
Python Skip unnecessary expressions in pysb models (#1185) MSVC compiler support (this time for rea...
C++ Add SuperLUMT support (#681) Sparsified dJydy (#686) Enabled support of impulse-free events for...
Fixes: Fix "maybe-uninitialized" compiler warning (#1495) Fix substitution of expressions in `droot...
Breaking changes: AMICI requires Python>=3.7 Updated package installation (PEP517/518): Creating s...
Python Restore support for species references (#1358) Add support for noise models in pysb (#1360) ...
Python Improve and extend available objective functions (#1235) Fix processing of compartment defin...
added python 3.8 support, dropped python 3.6 support (#898) Added logging functionality (#900) Fixe...
Python Fix simplification for pysb models (#1168) Pass verbosity flags to pysb network generation (...
New features: Python model import now supports SBML Events (#1443) Implement support for compilatio...
Fixed (re)initialization of sensitivities if ExpData::fixedParametersPreequilibration is set (#994) ...
Python: Implement support for variable compartments (#1036) Better handling of constant species (#1...
Python General improvements to SBML import (#1312, #1316, #1315, #1322 , #1324 #1333, #1329) Small ...
Fixes: Fixed pysb pattern matching during PEtab import by @FFroehlich in https://github.com/AMICI-d...
New: Allow specifying maximum integration time via amici::Solver::setMaxTime() (#1530) Py: Add fail...
[python] Added numpy and python wrappers that provide a more user friendly python API [python] Enabl...
Python Skip unnecessary expressions in pysb models (#1185) MSVC compiler support (this time for rea...
C++ Add SuperLUMT support (#681) Sparsified dJydy (#686) Enabled support of impulse-free events for...
Fixes: Fix "maybe-uninitialized" compiler warning (#1495) Fix substitution of expressions in `droot...