BREAKING CHANGE: Renaming {get|set}tNewtonPreequilibration to {get|set}Preequilibration (Closes #720) Make wurlitzer non-optional requirement for AMICI python package (Fixes missing AMICI errors when running from jupyter notebooks) Compute initial state for Model::getInitialStates if not already set (Fixes #818) Make swig generate pydoc comments from doxygen comments #830 (Closes #745) to provide Python docstrings for C++ wrapper functions feature(cmake) Add option to disable compiler optimizations for wrapfunctions.cpp (Fixes #828) (#829) Change SBML test suite to pytest to allow for parallel test execution… (#824) Fix(cmake): -E option is not available in all sed versions. Neither is the equivalent -r. Use --regexp-extended instead (Close...
Bug fixes: Python import: Fix log10 issues in observables (#382) Matlab: Fix broken model compilati...
Features / improvements: Speedup symbolic processing for ODE generation in python Bugfixes: Fix(p...
Features: Added symbol names to python-wrapped models and make available via Model.getParameterName...
Fixed (re)initialization of sensitivities if ExpData::fixedParametersPreequilibration is set (#994) ...
CRITICAL FIXES fix(python) fix symbolic computations for adjoint (#583) Features feature(python) ...
Python: Implement support for variable compartments (#1036) Better handling of constant species (#1...
Features: Python package: more flexible HDF5 library localization Extended CI: python tests, preequ...
Major revision of documentation Improved Python interface More comprehensive Python interface exampl...
Breaking changes: AMICI requires Python>=3.7 Updated package installation (PEP517/518): Creating s...
Changes in this release: All: Updated / extended documentation Fix reuse of Solver instances (#541...
added python 3.8 support, dropped python 3.6 support (#898) Added logging functionality (#900) Fixe...
fixes a critical bug in objective function computation for models compiled using sbml2amici and pysb...
[all] critical Fix long standing bugs in solving steadystate problems (including preequilibration) (...
[python] Added numpy and python wrappers that provide a more user friendly python API [python] Enabl...
Python Skip unnecessary expressions in pysb models (#1185) MSVC compiler support (this time for rea...
Bug fixes: Python import: Fix log10 issues in observables (#382) Matlab: Fix broken model compilati...
Features / improvements: Speedup symbolic processing for ODE generation in python Bugfixes: Fix(p...
Features: Added symbol names to python-wrapped models and make available via Model.getParameterName...
Fixed (re)initialization of sensitivities if ExpData::fixedParametersPreequilibration is set (#994) ...
CRITICAL FIXES fix(python) fix symbolic computations for adjoint (#583) Features feature(python) ...
Python: Implement support for variable compartments (#1036) Better handling of constant species (#1...
Features: Python package: more flexible HDF5 library localization Extended CI: python tests, preequ...
Major revision of documentation Improved Python interface More comprehensive Python interface exampl...
Breaking changes: AMICI requires Python>=3.7 Updated package installation (PEP517/518): Creating s...
Changes in this release: All: Updated / extended documentation Fix reuse of Solver instances (#541...
added python 3.8 support, dropped python 3.6 support (#898) Added logging functionality (#900) Fixe...
fixes a critical bug in objective function computation for models compiled using sbml2amici and pysb...
[all] critical Fix long standing bugs in solving steadystate problems (including preequilibration) (...
[python] Added numpy and python wrappers that provide a more user friendly python API [python] Enabl...
Python Skip unnecessary expressions in pysb models (#1185) MSVC compiler support (this time for rea...
Bug fixes: Python import: Fix log10 issues in observables (#382) Matlab: Fix broken model compilati...
Features / improvements: Speedup symbolic processing for ODE generation in python Bugfixes: Fix(p...
Features: Added symbol names to python-wrapped models and make available via Model.getParameterName...