fix: resolves bug in runINIT with csense vector resolves bug in changeRxns if equations are provided as structure chore: update KEGG mat files and trained HMMs to release 102 copied curation of getGenesFromGrRules from human-GEM (part of https://github.com/SysBioChalmers/Human-GEM/pull/392
Main improvements in this PR: Features (PR #393): speed up importYaml in loading model fields Fea...
Fixes (PR #222, #216): revise GPR for HMR_4137 as suggested by #214 add PDHA2 gene as an isoenzyme o...
feature RAVEN can now also be installed via MATLAB File Exchange, or even simpler, via MATLAB Add-On...
Main improvements in this release: Fix: simplifyModel: remove the boundary compartment when removin...
fix checkInstallation close version.txt after reading keggRxns.mat & getRxnsFromKEGG empty subSystem...
fix: checkInstallation throws warnings, not errors, when making binaries executable optimizeProb and...
Fix: remove non-metabolic genes, discovered using the GPT language model, from subsystems : #485 res...
fix: checkInstallation binary fix on Mac importModel write 0-length chars instead of empty cells if ...
fix: setParam when multiple 'obj' values are changed at the same time (solves #350) (PR #352) getMod...
fix: findGeneDeletions report zero flux and growth ratio for essential genes GitHub workflow parsing...
feat: readYAMLmodel and writeYAMLmodel support I/O of enzyme-constrained models in GECKO3-format f...
fix solveLP use specified parameters during flux minimization optimizeProb use default feasTol and o...
2 bugs are fixed. -p option made some bugs. toyplot library of stable version has bugs
fix: checkFunctionUniqueness on Mac/Unix with non-RAVEN paths. checkInstallation find printOrange o...
Fixes/Features (commit 098f7e3ddf03fc2454053d0cd50a9827b2729b98 , PR 382): resolves issues reported ...
Main improvements in this PR: Features (PR #393): speed up importYaml in loading model fields Fea...
Fixes (PR #222, #216): revise GPR for HMR_4137 as suggested by #214 add PDHA2 gene as an isoenzyme o...
feature RAVEN can now also be installed via MATLAB File Exchange, or even simpler, via MATLAB Add-On...
Main improvements in this release: Fix: simplifyModel: remove the boundary compartment when removin...
fix checkInstallation close version.txt after reading keggRxns.mat & getRxnsFromKEGG empty subSystem...
fix: checkInstallation throws warnings, not errors, when making binaries executable optimizeProb and...
Fix: remove non-metabolic genes, discovered using the GPT language model, from subsystems : #485 res...
fix: checkInstallation binary fix on Mac importModel write 0-length chars instead of empty cells if ...
fix: setParam when multiple 'obj' values are changed at the same time (solves #350) (PR #352) getMod...
fix: findGeneDeletions report zero flux and growth ratio for essential genes GitHub workflow parsing...
feat: readYAMLmodel and writeYAMLmodel support I/O of enzyme-constrained models in GECKO3-format f...
fix solveLP use specified parameters during flux minimization optimizeProb use default feasTol and o...
2 bugs are fixed. -p option made some bugs. toyplot library of stable version has bugs
fix: checkFunctionUniqueness on Mac/Unix with non-RAVEN paths. checkInstallation find printOrange o...
Fixes/Features (commit 098f7e3ddf03fc2454053d0cd50a9827b2729b98 , PR 382): resolves issues reported ...
Main improvements in this PR: Features (PR #393): speed up importYaml in loading model fields Fea...
Fixes (PR #222, #216): revise GPR for HMR_4137 as suggested by #214 add PDHA2 gene as an isoenzyme o...
feature RAVEN can now also be installed via MATLAB File Exchange, or even simpler, via MATLAB Add-On...