Fix: remove non-metabolic genes, discovered using the GPT language model, from subsystems : #485 resolves: #481 #484 #480 resolves: #476 #477 #478 #474 and #472 resolve: #471 #467 resolves: #463 #464 #465 #466 #461 resolves #457 #455 resolves: #452 #453 resolves: #449 #451 resolves: #447 #450 resolves: #444 #445 resolves: #443 #442 resolves: #426 Feature (PR #482): refactor extractAllianceGenomeOrthologs from reading JSON to TSV file, as discussed in #15 of Mouse-GEM Feature/Style (PR #479): add @feiranl as a contributor Feature (PR #475): improve issue and PR templates Fix(PR #462): add subunit NDUFA7 to complex I, as explained in #446 Fix (PR #460): correct wrongly associated CHEBI annotation to MAM03882,...
Main improvements in this PR: Style/Features (PR #270): replace rxns and mets fields in Human-GEM a...
Fixes (commit f3f078952fac598c8d08ae15693592bbdb8c72e6): change IDs conflicting to recent changes ma...
Main improvements in this PR: Fixes (PR 460): fix: correct MAM03882 annotation, as reported in Mous...
Fixes (PR #222, #216): revise GPR for HMR_4137 as suggested by #214 add PDHA2 gene as an isoenzyme o...
Fixes (PR #555, #541, #538, #532, #529, #525) resolve duplicate krebs cycle reactions catalyzed by a...
Features (PR #440, #437): add compartment information to genes.tsv based on SwissProt annotation, Ce...
Fixes (PR #351): remove duplicated reactions, as reported in #344 Fixes (PR #343): sync met ids wi...
Fixes (PR #206): curate subSystems names as proposed in #205 replace 131 Metabolism of xenobiotics b...
Main improvements in this PR: Features (PR #393): speed up importYaml in loading model fields Fea...
Style (PR #294): add and reformat citations in README Fixes (PR #292): replace deprecated Ensembl ...
Features (PR #245): a new column metMAID is added to metabolites.tsv, according to the plan proposed...
Fix (commit 339ff64ccc32fccc0b3be2c33f6ff199bc6bcc53): revise workflow to avoid duplicated checks ...
Fixes (PR #643) remove MAR20015, MAR20014, MAR20052 for being duplicates of MAR04689, MAR06981, MAR0...
Fixes (commit 565a306bbecbdf2548f32d6500d9bab4c6f114ee): change reaction IDs conflicting to recent c...
Fixes (PR 460): fix: correct MAM03882 annotation, as reported in Mouse-GEM #21 Fixes (PR 429): fea...
Main improvements in this PR: Style/Features (PR #270): replace rxns and mets fields in Human-GEM a...
Fixes (commit f3f078952fac598c8d08ae15693592bbdb8c72e6): change IDs conflicting to recent changes ma...
Main improvements in this PR: Fixes (PR 460): fix: correct MAM03882 annotation, as reported in Mous...
Fixes (PR #222, #216): revise GPR for HMR_4137 as suggested by #214 add PDHA2 gene as an isoenzyme o...
Fixes (PR #555, #541, #538, #532, #529, #525) resolve duplicate krebs cycle reactions catalyzed by a...
Features (PR #440, #437): add compartment information to genes.tsv based on SwissProt annotation, Ce...
Fixes (PR #351): remove duplicated reactions, as reported in #344 Fixes (PR #343): sync met ids wi...
Fixes (PR #206): curate subSystems names as proposed in #205 replace 131 Metabolism of xenobiotics b...
Main improvements in this PR: Features (PR #393): speed up importYaml in loading model fields Fea...
Style (PR #294): add and reformat citations in README Fixes (PR #292): replace deprecated Ensembl ...
Features (PR #245): a new column metMAID is added to metabolites.tsv, according to the plan proposed...
Fix (commit 339ff64ccc32fccc0b3be2c33f6ff199bc6bcc53): revise workflow to avoid duplicated checks ...
Fixes (PR #643) remove MAR20015, MAR20014, MAR20052 for being duplicates of MAR04689, MAR06981, MAR0...
Fixes (commit 565a306bbecbdf2548f32d6500d9bab4c6f114ee): change reaction IDs conflicting to recent c...
Fixes (PR 460): fix: correct MAM03882 annotation, as reported in Mouse-GEM #21 Fixes (PR 429): fea...
Main improvements in this PR: Style/Features (PR #270): replace rxns and mets fields in Human-GEM a...
Fixes (commit f3f078952fac598c8d08ae15693592bbdb8c72e6): change IDs conflicting to recent changes ma...
Main improvements in this PR: Fixes (PR 460): fix: correct MAM03882 annotation, as reported in Mous...