fix: checkInstallation throws warnings, not errors, when making binaries executable optimizeProb and readYAMLmodel on MATLAB <2020b (solves #478) getModelFromHomology correct handling of OLD_ genes and "or" relationships (solves #481) prepINITData gets option to skip scaling, as ftINIT will otherwise fail for some models (solves #483
Main improvements in this release: Fix: simplifyModel: remove the boundary compartment when removin...
Main improvements in this PR: fix: exportModel prevent duplicated InChI prefix (PR #335) contractMo...
fix: getModelFromHomology did not remove non-matching reactions after changes introduced in v2.5.2 (...
fix: findGeneDeletions report zero flux and growth ratio for essential genes GitHub workflow parsing...
fix: readYAMLmodel also reads metNotes fields getMetaCycModelForOrganism handling of large genomes ...
fix solveLP use specified parameters during flux minimization optimizeProb use default feasTol and o...
feature RAVEN can now also be installed via MATLAB File Exchange, or even simpler, via MATLAB Add-On...
fix: checkInstallation binary fix on Mac importModel write 0-length chars instead of empty cells if ...
fix: fitTasks gave wrongly formatted model.b field checkInstallation -> makeBinaryExecutable on Unix...
fix: checkFunctionUniqueness on Mac/Unix with non-RAVEN paths. checkInstallation find printOrange o...
Main improvements in this PR: fix: checkInstallation ensures that binaries (blastp etc.) and MEX f...
fix: exportModel correct handling if a compartment ID is i (solves #366) functions that use a specie...
fix: setParam when multiple 'obj' values are changed at the same time (solves #350) (PR #352) getMod...
feat: readYAMLmodel and writeYAMLmodel support I/O of enzyme-constrained models in GECKO3-format f...
fix checkInstallation close version.txt after reading keggRxns.mat & getRxnsFromKEGG empty subSystem...
Main improvements in this release: Fix: simplifyModel: remove the boundary compartment when removin...
Main improvements in this PR: fix: exportModel prevent duplicated InChI prefix (PR #335) contractMo...
fix: getModelFromHomology did not remove non-matching reactions after changes introduced in v2.5.2 (...
fix: findGeneDeletions report zero flux and growth ratio for essential genes GitHub workflow parsing...
fix: readYAMLmodel also reads metNotes fields getMetaCycModelForOrganism handling of large genomes ...
fix solveLP use specified parameters during flux minimization optimizeProb use default feasTol and o...
feature RAVEN can now also be installed via MATLAB File Exchange, or even simpler, via MATLAB Add-On...
fix: checkInstallation binary fix on Mac importModel write 0-length chars instead of empty cells if ...
fix: fitTasks gave wrongly formatted model.b field checkInstallation -> makeBinaryExecutable on Unix...
fix: checkFunctionUniqueness on Mac/Unix with non-RAVEN paths. checkInstallation find printOrange o...
Main improvements in this PR: fix: checkInstallation ensures that binaries (blastp etc.) and MEX f...
fix: exportModel correct handling if a compartment ID is i (solves #366) functions that use a specie...
fix: setParam when multiple 'obj' values are changed at the same time (solves #350) (PR #352) getMod...
feat: readYAMLmodel and writeYAMLmodel support I/O of enzyme-constrained models in GECKO3-format f...
fix checkInstallation close version.txt after reading keggRxns.mat & getRxnsFromKEGG empty subSystem...
Main improvements in this release: Fix: simplifyModel: remove the boundary compartment when removin...
Main improvements in this PR: fix: exportModel prevent duplicated InChI prefix (PR #335) contractMo...
fix: getModelFromHomology did not remove non-matching reactions after changes introduced in v2.5.2 (...