fix: fitTasks gave wrongly formatted model.b field checkInstallation -> makeBinaryExecutable on Unix (solves #460). writeYAMLmodel with logical model.ec.geckoLight removeRavenFromPath with unix paths ftINIT and Gurobi version 10: too sensitive to low int tolerances feat: checkInstallation highlight when new version is availabl
Release 2.0.17.1: Undetected editing mistake in blimpy/init.py led to a missing value for version d...
fix: readYAMLmodel also reads metNotes fields getMetaCycModelForOrganism handling of large genomes ...
Main improvements in this release: Updating database files: corrected capitalization of metBiGGID f...
fix: checkInstallation throws warnings, not errors, when making binaries executable optimizeProb and...
fix solveLP use specified parameters during flux minimization optimizeProb use default feasTol and o...
fix: checkInstallation binary fix on Mac importModel write 0-length chars instead of empty cells if ...
fix: checkFunctionUniqueness on Mac/Unix with non-RAVEN paths. checkInstallation find printOrange o...
feat: readYAMLmodel and writeYAMLmodel support I/O of enzyme-constrained models in GECKO3-format f...
fix checkInstallation close version.txt after reading keggRxns.mat & getRxnsFromKEGG empty subSystem...
fix correctly parse relative paths to model files on Mac/Unix (e.g. by importModel) feature checkI...
fix: exportModel correct handling if a compartment ID is i (solves #366) functions that use a specie...
Main improvements in this release: Fix: simplifyModel: remove the boundary compartment when removin...
Main improvements in this PR: fix: exportModel prevent duplicated InChI prefix (PR #335) contractMo...
chore: update KEGG and pre-trained HMMs to version 105. fix: addRxns correctly defines rev field, ...
fix: resolves bug in runINIT with csense vector resolves bug in changeRxns if equations are provided...
Release 2.0.17.1: Undetected editing mistake in blimpy/init.py led to a missing value for version d...
fix: readYAMLmodel also reads metNotes fields getMetaCycModelForOrganism handling of large genomes ...
Main improvements in this release: Updating database files: corrected capitalization of metBiGGID f...
fix: checkInstallation throws warnings, not errors, when making binaries executable optimizeProb and...
fix solveLP use specified parameters during flux minimization optimizeProb use default feasTol and o...
fix: checkInstallation binary fix on Mac importModel write 0-length chars instead of empty cells if ...
fix: checkFunctionUniqueness on Mac/Unix with non-RAVEN paths. checkInstallation find printOrange o...
feat: readYAMLmodel and writeYAMLmodel support I/O of enzyme-constrained models in GECKO3-format f...
fix checkInstallation close version.txt after reading keggRxns.mat & getRxnsFromKEGG empty subSystem...
fix correctly parse relative paths to model files on Mac/Unix (e.g. by importModel) feature checkI...
fix: exportModel correct handling if a compartment ID is i (solves #366) functions that use a specie...
Main improvements in this release: Fix: simplifyModel: remove the boundary compartment when removin...
Main improvements in this PR: fix: exportModel prevent duplicated InChI prefix (PR #335) contractMo...
chore: update KEGG and pre-trained HMMs to version 105. fix: addRxns correctly defines rev field, ...
fix: resolves bug in runINIT with csense vector resolves bug in changeRxns if equations are provided...
Release 2.0.17.1: Undetected editing mistake in blimpy/init.py led to a missing value for version d...
fix: readYAMLmodel also reads metNotes fields getMetaCycModelForOrganism handling of large genomes ...
Main improvements in this release: Updating database files: corrected capitalization of metBiGGID f...