Main improvements in this release: Fix: simplifyModel: remove the boundary compartment when removing boundary mets. (PR #319) removeGenes: fix bug where canRxnCarryFlux failed to evaluate if rxns with non-standardized grRules can carry any flux. (PR #320) Refactor: removeGenes: drastic speed improvement (>19-fold in ecHumanGEM). (PR #323
fix: checkInstallation throws warnings, not errors, when making binaries executable optimizeProb and...
RavenR version 2.1.6 now on CRAN and released here. Minor updates and bug fixes, including: added n...
fix: getModelFromHomology did not remove non-matching reactions after changes introduced in v2.5.2 (...
Main improvements in this release: Updating database files: corrected capitalization of metBiGGID f...
Main improvements in this PR: fix: checkInstallation ensures that binaries (blastp etc.) and MEX f...
Main improvements in this PR: fix: exportModel prevent duplicated InChI prefix (PR #335) contractMo...
fix solveLP use specified parameters during flux minimization optimizeProb use default feasTol and o...
fix: findGeneDeletions report zero flux and growth ratio for essential genes GitHub workflow parsing...
feature RAVEN can now also be installed via MATLAB File Exchange, or even simpler, via MATLAB Add-On...
Main improvements in this release: Documentation: standardized the definition part and comments for...
Main improvements in this release: fix: ravenCobraWrapper parsing of PubMed IDs and other reaction ...
fix: exportModel correct handling if a compartment ID is i (solves #366) functions that use a specie...
fix: resolves bug in runINIT with csense vector resolves bug in changeRxns if equations are provided...
refactor: constructS is about 3-times faster fix: set solver coherently as preference and global v...
RavenR version 2.1.4 now on CRAN and released here. 2.1.4 Updates to a number of functions and new f...
fix: checkInstallation throws warnings, not errors, when making binaries executable optimizeProb and...
RavenR version 2.1.6 now on CRAN and released here. Minor updates and bug fixes, including: added n...
fix: getModelFromHomology did not remove non-matching reactions after changes introduced in v2.5.2 (...
Main improvements in this release: Updating database files: corrected capitalization of metBiGGID f...
Main improvements in this PR: fix: checkInstallation ensures that binaries (blastp etc.) and MEX f...
Main improvements in this PR: fix: exportModel prevent duplicated InChI prefix (PR #335) contractMo...
fix solveLP use specified parameters during flux minimization optimizeProb use default feasTol and o...
fix: findGeneDeletions report zero flux and growth ratio for essential genes GitHub workflow parsing...
feature RAVEN can now also be installed via MATLAB File Exchange, or even simpler, via MATLAB Add-On...
Main improvements in this release: Documentation: standardized the definition part and comments for...
Main improvements in this release: fix: ravenCobraWrapper parsing of PubMed IDs and other reaction ...
fix: exportModel correct handling if a compartment ID is i (solves #366) functions that use a specie...
fix: resolves bug in runINIT with csense vector resolves bug in changeRxns if equations are provided...
refactor: constructS is about 3-times faster fix: set solver coherently as preference and global v...
RavenR version 2.1.4 now on CRAN and released here. 2.1.4 Updates to a number of functions and new f...
fix: checkInstallation throws warnings, not errors, when making binaries executable optimizeProb and...
RavenR version 2.1.6 now on CRAN and released here. Minor updates and bug fixes, including: added n...
fix: getModelFromHomology did not remove non-matching reactions after changes introduced in v2.5.2 (...