broadinstitute/viral-ngs: v1.13.3

A set of scripts and tools for the analysis of viral NGS data. More detailed documentation can be found at http://viral-ngs.readthedocs.org/ This includes installation instructions, usage instructions for the command line tools, and usage of the pipeline infrastructure. v.1.13.3 Release Notes Fixed: the vphaser2 step is now hardened against empty input resulting from removal of doubly-mapped reads; in such cases, a blank vphaser output file is now created, allowing the pipeline to continu