Publication date
February 2016
DOIAbstract
Bugfixes and unit testing of Trinity and fixes to Broad-specific pipeline scripts
Bugfixes and unit testing of Trinity and fixes to Broad-specific pipeline scripts
This is a release with many changes, including new WDL pipelines, a distribution of viral-ngs on DNA...
Implementation of basic metagenomics tools: kraken and krona. Bug fix for silent tool failures intro...
New: The Snakemake pipeline can now source database files from S3, GS, or SFTP if given protocol-pr...
Robust behavior in depletion, assembly and metagenomics for empty or almost-empty data sets. More in...
Fixed: Fix issues related to Trinity on certain environments (#900) allow for flexibility in gatk v...
A set of scripts and tools for the analysis of viral NGS data. More detailed documentation can be f...
easy_deploy now uses conda-based install, trinity download install method now checks for meryl, tool...
Tune nucmer parameters in scaffolding step to tolerate more diverse viruses (HIV, Influenza). Misc b...
easy-deploy: improvements to EC2 deployment (region flexibility, 8GB->300GB storage) CondaPackage: f...
New: Improvements to the pipeline to support single-end reads in additional stages, including the d...
Bug fixes, tested support for multi-segment genomes, and ability to download FASTAs, feature tables,...
Small fixes OSX compatibility fixes (most steps should work, with the exception of intrahost and m...
Updates: make easy-deploy script more generic (less Broad specific) more documentation updates bug...
An analysis package for viral sequence data. Includes read processing (human depletion, etc), de no...
A set of scripts and tools for the analysis of viral NGS data. More detailed documentation can be f...
This is a release with many changes, including new WDL pipelines, a distribution of viral-ngs on DNA...
Implementation of basic metagenomics tools: kraken and krona. Bug fix for silent tool failures intro...
New: The Snakemake pipeline can now source database files from S3, GS, or SFTP if given protocol-pr...
Robust behavior in depletion, assembly and metagenomics for empty or almost-empty data sets. More in...
Fixed: Fix issues related to Trinity on certain environments (#900) allow for flexibility in gatk v...
A set of scripts and tools for the analysis of viral NGS data. More detailed documentation can be f...
easy_deploy now uses conda-based install, trinity download install method now checks for meryl, tool...
Tune nucmer parameters in scaffolding step to tolerate more diverse viruses (HIV, Influenza). Misc b...
easy-deploy: improvements to EC2 deployment (region flexibility, 8GB->300GB storage) CondaPackage: f...
New: Improvements to the pipeline to support single-end reads in additional stages, including the d...
Bug fixes, tested support for multi-segment genomes, and ability to download FASTAs, feature tables,...
Small fixes OSX compatibility fixes (most steps should work, with the exception of intrahost and m...
Updates: make easy-deploy script more generic (less Broad specific) more documentation updates bug...
An analysis package for viral sequence data. Includes read processing (human depletion, etc), de no...
A set of scripts and tools for the analysis of viral NGS data. More detailed documentation can be f...
This is a release with many changes, including new WDL pipelines, a distribution of viral-ngs on DNA...
Implementation of basic metagenomics tools: kraken and krona. Bug fix for silent tool failures intro...
New: The Snakemake pipeline can now source database files from S3, GS, or SFTP if given protocol-pr...
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