New: Improvements to the pipeline to support single-end reads in additional stages, including the depletion, filtering, and metagenomic steps (blastn, bmtagger, trimmomatic, mvicuna, kraken) Scripts added related to auto deployment of viral-ngs conda package Updated/changed: novoalign 3.04.04 -> 3.06.0
New: WDL workflow added to read_utils.wdl::downsample() [#819, #821, #823] WDL workflows added for ...
New: binned coverage plot option in reports.py align_and_plot via --binLargePlots (#957) (thanks to...
New: The Snakemake pipeline can now source database files from S3, GS, or SFTP if given protocol-pr...
New: Improvements to the pipeline to support single-end reads in additional stages, including the d...
A set of scripts and tools for the analysis of viral NGS data. More detailed documentation can be f...
This is a release with many changes, including new WDL pipelines, a distribution of viral-ngs on DNA...
New: New BWA-based LCA metagenomics function: metagenomics. align_rna() Align to metagenomics bwa i...
A set of scripts and tools for the analysis of viral NGS data. More detailed documentation can be f...
New: [Nothing] Fixed: the conda channel order has been corrected to reflect the bioconda-preferre...
New: [#762] The taxon_filter.py file now has a new command, deplete_bwa_bam, which uses bwa for dep...
New: WDL workflow for Genbank submission [#797, #793, #800] metagenomics.py taxlevel_summary to tab...
Implementation of basic metagenomics tools: kraken and krona. Bug fix for silent tool failures intro...
New: The Snakemake pipeline can now source database files from S3, GS, or SFTP if given protocol-pr...
An analysis package for viral sequence data. Includes read processing (human depletion, etc), de no...
Packages installed via conda now look for an active conda environment as the install location before...
New: WDL workflow added to read_utils.wdl::downsample() [#819, #821, #823] WDL workflows added for ...
New: binned coverage plot option in reports.py align_and_plot via --binLargePlots (#957) (thanks to...
New: The Snakemake pipeline can now source database files from S3, GS, or SFTP if given protocol-pr...
New: Improvements to the pipeline to support single-end reads in additional stages, including the d...
A set of scripts and tools for the analysis of viral NGS data. More detailed documentation can be f...
This is a release with many changes, including new WDL pipelines, a distribution of viral-ngs on DNA...
New: New BWA-based LCA metagenomics function: metagenomics. align_rna() Align to metagenomics bwa i...
A set of scripts and tools for the analysis of viral NGS data. More detailed documentation can be f...
New: [Nothing] Fixed: the conda channel order has been corrected to reflect the bioconda-preferre...
New: [#762] The taxon_filter.py file now has a new command, deplete_bwa_bam, which uses bwa for dep...
New: WDL workflow for Genbank submission [#797, #793, #800] metagenomics.py taxlevel_summary to tab...
Implementation of basic metagenomics tools: kraken and krona. Bug fix for silent tool failures intro...
New: The Snakemake pipeline can now source database files from S3, GS, or SFTP if given protocol-pr...
An analysis package for viral sequence data. Includes read processing (human depletion, etc), de no...
Packages installed via conda now look for an active conda environment as the install location before...
New: WDL workflow added to read_utils.wdl::downsample() [#819, #821, #823] WDL workflows added for ...
New: binned coverage plot option in reports.py align_and_plot via --binLargePlots (#957) (thanks to...
New: The Snakemake pipeline can now source database files from S3, GS, or SFTP if given protocol-pr...
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